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The map label for this gene is ynbB [H]

Identifier: 226949037

GI number: 226949037

Start: 2011288

End: 2012571

Strand: Reverse

Name: ynbB [H]

Synonym: CLM_1953

Alternate gene names: 226949037

Gene position: 2012571-2011288 (Counterclockwise)

Preceding gene: 226949038

Following gene: 226949035

Centisome position: 48.43

GC content: 33.1

Gene sequence:

>1284_bases
ATGCTACATATAACAAAAGATACTTTAAAAAATATATATGACATAGATCCTAAAGCCTTAGATTTATATGAAAAAGCTAT
AGAAGATATTAAAGACGAGTTCCAAAAATATGATGATATAAGAGAATTTAACCAACTAAAAGTTTTAAATGCTCTTCAGG
AAGAAAGAGTTAGCGAATCTCATTTCACAAATTCTACAGGCTATGGATATGGAGATATAGGAAGAGATACCTTAGATAGA
GTTTATGCTAGGATATTTAACACAGAAAGTGCCTTAGTAAGACCACATTTTGTAAATGGTACTCATGCTATTGGAGCTGC
TCTATTTGGCAATTTAAGACCAGGGGATACCATGTTATCTGTATGCGGAAAACCCTATGATACATTACATAATATAATAG
GCATAGAAGGGGAAGCGAACATAGGTTCTTTAAAAGATTTTGGAGTTAAATATAAACAAGTAAATTTAAAAGAGGATCAC
TCTATAAATTATGAAGAAATAGAAAAGATATTAAAAAGGGATACTTCAATAAAACTTATACATATTCAACGTTCTACGGG
TTATGGATGGAGAAAAGCTCTTCTTATACCTGAAATAGAAAAATTAATTTTCTTTGTAAAATCCATAAAAAAAGAAATTA
TATGTTTTGTAGATAACTGTTATGGCGAATTTATAGATACTAAAGAGCCAACGGACGTTGGCGCAGATTTAGTGGCAGGT
TCCCTAATAAAAAATATAGGCGGAGGAATAGCACCCACTGGTGGGTATATAGCTGGCAGGGAAAAATATGTAACTCAAGC
TGCTTATAGATTGACTACTCCTGGTATAGGGGGAGAATGTGGCTCTACCTTTGGAGTGGTGAGACAAATGTATCAAGGAC
TATTTCTAGCACCACATATATCTATGGAAGCTATTAAAGGAGCAGTGTTCTGTTCAAGAATAATGGAATTAGCTGGTTTT
GAGGTTCTTCCAAAATATAATGATGATAGAAGTGATATAATTCAAGCTATTAAGTTTAACGATAAAGAAAAGCTTATAAA
TTTTTGCAAGGGAATACAGCAAGGTTCTCCAGTAGATTCTTTCGTTTCTTGTGAGCCGTGGGATATGCCAGGCTATAAAG
ATCAAGTAATTATGGCGGCTGGAGCATTTATTCAAGGATCTTCCATAGAATTATCTGCAGATGCACCTATAAGAGATCCT
TTTATAGCATACCTACAGGGTGGACTTACTTTTGATCATGCTAAAATAGGAATTTTAATTTCCCTATCAAAAATATTAAA
ATAA

Upstream 100 bases:

>100_bases
GTTAATTGCCTATTCTTTTTTTATATGTTAATATATACAATGTTAGATAATAATACATACTTATTATTTTTCTTACATAT
AGAGGAGGATGGAAATAAAA

Downstream 100 bases:

>100_bases
TAAATTTTAACATGGAAATTAACCGCAGTTACCTTGGTTATATTAAGTTTAAAATGATAGAAGAAAAGTAGAATTAATAT
AAAAATAATTCCTAGAAGTT

Product: aluminum resistance protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MLHITKDTLKNIYDIDPKALDLYEKAIEDIKDEFQKYDDIREFNQLKVLNALQEERVSESHFTNSTGYGYGDIGRDTLDR
VYARIFNTESALVRPHFVNGTHAIGAALFGNLRPGDTMLSVCGKPYDTLHNIIGIEGEANIGSLKDFGVKYKQVNLKEDH
SINYEEIEKILKRDTSIKLIHIQRSTGYGWRKALLIPEIEKLIFFVKSIKKEIICFVDNCYGEFIDTKEPTDVGADLVAG
SLIKNIGGGIAPTGGYIAGREKYVTQAAYRLTTPGIGGECGSTFGVVRQMYQGLFLAPHISMEAIKGAVFCSRIMELAGF
EVLPKYNDDRSDIIQAIKFNDKEKLINFCKGIQQGSPVDSFVSCEPWDMPGYKDQVIMAAGAFIQGSSIELSADAPIRDP
FIAYLQGGLTFDHAKIGILISLSKILK

Sequences:

>Translated_427_residues
MLHITKDTLKNIYDIDPKALDLYEKAIEDIKDEFQKYDDIREFNQLKVLNALQEERVSESHFTNSTGYGYGDIGRDTLDR
VYARIFNTESALVRPHFVNGTHAIGAALFGNLRPGDTMLSVCGKPYDTLHNIIGIEGEANIGSLKDFGVKYKQVNLKEDH
SINYEEIEKILKRDTSIKLIHIQRSTGYGWRKALLIPEIEKLIFFVKSIKKEIICFVDNCYGEFIDTKEPTDVGADLVAG
SLIKNIGGGIAPTGGYIAGREKYVTQAAYRLTTPGIGGECGSTFGVVRQMYQGLFLAPHISMEAIKGAVFCSRIMELAGF
EVLPKYNDDRSDIIQAIKFNDKEKLINFCKGIQQGSPVDSFVSCEPWDMPGYKDQVIMAAGAFIQGSSIELSADAPIRDP
FIAYLQGGLTFDHAKIGILISLSKILK
>Mature_427_residues
MLHITKDTLKNIYDIDPKALDLYEKAIEDIKDEFQKYDDIREFNQLKVLNALQEERVSESHFTNSTGYGYGDIGRDTLDR
VYARIFNTESALVRPHFVNGTHAIGAALFGNLRPGDTMLSVCGKPYDTLHNIIGIEGEANIGSLKDFGVKYKQVNLKEDH
SINYEEIEKILKRDTSIKLIHIQRSTGYGWRKALLIPEIEKLIFFVKSIKKEIICFVDNCYGEFIDTKEPTDVGADLVAG
SLIKNIGGGIAPTGGYIAGREKYVTQAAYRLTTPGIGGECGSTFGVVRQMYQGLFLAPHISMEAIKGAVFCSRIMELAGF
EVLPKYNDDRSDIIQAIKFNDKEKLINFCKGIQQGSPVDSFVSCEPWDMPGYKDQVIMAAGAFIQGSSIELSADAPIRDP
FIAYLQGGLTFDHAKIGILISLSKILK

Specific function: Unknown

COG id: COG4100

COG function: function code P; Cystathionine beta-lyase family protein involved in aluminum resistance

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009651
- InterPro:   IPR015424
- InterPro:   IPR015421 [H]

Pfam domain/function: PF06838 Alum_res [H]

EC number: NA

Molecular weight: Translated: 47495; Mature: 47495

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHITKDTLKNIYDIDPKALDLYEKAIEDIKDEFQKYDDIREFNQLKVLNALQEERVSES
CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFTNSTGYGYGDIGRDTLDRVYARIFNTESALVRPHFVNGTHAIGAALFGNLRPGDTMLS
HCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCEECCCHHHHHHHHHCCCCCCHHHHH
VCGKPYDTLHNIIGIEGEANIGSLKDFGVKYKQVNLKEDHSINYEEIEKILKRDTSIKLI
HCCCCHHHHHHHCCCCCCCCCCCHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEE
HIQRSTGYGWRKALLIPEIEKLIFFVKSIKKEIICFVDNCYGEFIDTKEPTDVGADLVAG
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
SLIKNIGGGIAPTGGYIAGREKYVTQAAYRLTTPGIGGECGSTFGVVRQMYQGLFLAPHI
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEECCCC
SMEAIKGAVFCSRIMELAGFEVLPKYNDDRSDIIQAIKFNDKEKLINFCKGIQQGSPVDS
CHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
FVSCEPWDMPGYKDQVIMAAGAFIQGSSIELSADAPIRDPFIAYLQGGLTFDHAKIGILI
CCCCCCCCCCCCCCCEEEEECCEEECCCEEEECCCCCCCHHHHHHHCCCEECCCHHHHEE
SLSKILK
EHHHHHC
>Mature Secondary Structure
MLHITKDTLKNIYDIDPKALDLYEKAIEDIKDEFQKYDDIREFNQLKVLNALQEERVSES
CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFTNSTGYGYGDIGRDTLDRVYARIFNTESALVRPHFVNGTHAIGAALFGNLRPGDTMLS
HCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCEECCCHHHHHHHHHCCCCCCHHHHH
VCGKPYDTLHNIIGIEGEANIGSLKDFGVKYKQVNLKEDHSINYEEIEKILKRDTSIKLI
HCCCCHHHHHHHCCCCCCCCCCCHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEE
HIQRSTGYGWRKALLIPEIEKLIFFVKSIKKEIICFVDNCYGEFIDTKEPTDVGADLVAG
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
SLIKNIGGGIAPTGGYIAGREKYVTQAAYRLTTPGIGGECGSTFGVVRQMYQGLFLAPHI
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEECCCC
SMEAIKGAVFCSRIMELAGFEVLPKYNDDRSDIIQAIKFNDKEKLINFCKGIQQGSPVDS
CHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
FVSCEPWDMPGYKDQVIMAAGAFIQGSSIELSADAPIRDPFIAYLQGGLTFDHAKIGILI
CCCCCCCCCCCCCCCEEEEECCEEECCCEEEECCCCCCCHHHHHHHCCCEECCCHHHHEE
SLSKILK
EHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]