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The map label for this gene is ygcF [C]

Identifier: 226948886

GI number: 226948886

Start: 1828172

End: 1828837

Strand: Direct

Name: ygcF [C]

Synonym: CLM_1796

Alternate gene names: 226948886

Gene position: 1828172-1828837 (Clockwise)

Preceding gene: 226948885

Following gene: 226948887

Centisome position: 44.0

GC content: 28.98

Gene sequence:

>666_bases
ATGGATTTTAAGGTGGTTGAAAGGTTTGTAAGCATAAATGGAGAAGGAAGGCGTTGTGGACAACTGGCTATATTCATAAG
ATTCGCGGGTTGTAATTTAAACTGTAGCTATTGTGATACACTTTGGGCAAATGAAAAGGATGTACCCTATGAAGTATTAA
GTTCCAAAGATATATATGAATATATTAAGTCCAAAGAGGTTAAAAATGTAACTTTAACAGGAGGAGAACCTCTTCTACAA
AAGGGAATAATGGAGTTATTAAAACTTTTGTCTAAGGATAAAGAGCTTTATGTGGAAATTGAGACAAATGGCAGCATATT
ATTAGATGAATTTTTGAATATAGAAAATTCACCAAGTTTTACTATGGATTATAAACTTCCTTTAAGTAATATGGAAAATA
AAATGGCATTAGATAACTTTAAATATTTAACTAAGAAGGATACAGTAAAATTTGTATCAGGTAGTATAGAGGATTTAGAA
AAAGCTAGAGAAATAATAAATAAGTATAACTTAGTAGATAAAACTAATGTATATATAAGTCCTGTTTTTGGAAAAATTAA
TTTAGATACTATTGTAGAATTTATGAAAAATAATAGAATGAATGGAGTTAATTTACAACTGCAGCTTCACAAGATTATAT
GGGAGCCTAGTAAGAGAGGAGTATAG

Upstream 100 bases:

>100_bases
TATAAAATTATGAAGGATAGAGGATATAATGTAAAAAGTACTACAGTTTATGAAACACCTAATAATAGTGCTACCTATGA
AGAAAGTGGGGTAATTTAAA

Downstream 100 bases:

>100_bases
TATATGGCAATTGATGTTAAAGCAATTGAAGAACACATAAGGGGGATTTTGATAGCTTTAGGAGACGATCCAGAAAGAGA
AGGTCTAAAGAACACACCAA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MDFKVVERFVSINGEGRRCGQLAIFIRFAGCNLNCSYCDTLWANEKDVPYEVLSSKDIYEYIKSKEVKNVTLTGGEPLLQ
KGIMELLKLLSKDKELYVEIETNGSILLDEFLNIENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLE
KAREIINKYNLVDKTNVYISPVFGKINLDTIVEFMKNNRMNGVNLQLQLHKIIWEPSKRGV

Sequences:

>Translated_221_residues
MDFKVVERFVSINGEGRRCGQLAIFIRFAGCNLNCSYCDTLWANEKDVPYEVLSSKDIYEYIKSKEVKNVTLTGGEPLLQ
KGIMELLKLLSKDKELYVEIETNGSILLDEFLNIENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLE
KAREIINKYNLVDKTNVYISPVFGKINLDTIVEFMKNNRMNGVNLQLQLHKIIWEPSKRGV
>Mature_221_residues
MDFKVVERFVSINGEGRRCGQLAIFIRFAGCNLNCSYCDTLWANEKDVPYEVLSSKDIYEYIKSKEVKNVTLTGGEPLLQ
KGIMELLKLLSKDKELYVEIETNGSILLDEFLNIENSPSFTMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLE
KAREIINKYNLVDKTNVYISPVFGKINLDTIVEFMKNNRMNGVNLQLQLHKIIWEPSKRGV

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25446; Mature: 25446

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFKVVERFVSINGEGRRCGQLAIFIRFAGCNLNCSYCDTLWANEKDVPYEVLSSKDIYE
CCHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCCCCHHHHCCCHHHH
YIKSKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGSILLDEFLNIENSPSF
HHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEHHHHCCCCCCCE
TMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKAREIINKYNLVDKTNVYIS
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEE
PVFGKINLDTIVEFMKNNRMNGVNLQLQLHKIIWEPSKRGV
EEECCCCHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCC
>Mature Secondary Structure
MDFKVVERFVSINGEGRRCGQLAIFIRFAGCNLNCSYCDTLWANEKDVPYEVLSSKDIYE
CCHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCCCCHHHHCCCHHHH
YIKSKEVKNVTLTGGEPLLQKGIMELLKLLSKDKELYVEIETNGSILLDEFLNIENSPSF
HHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEHHHHCCCCCCCE
TMDYKLPLSNMENKMALDNFKYLTKKDTVKFVSGSIEDLEKAREIINKYNLVDKTNVYIS
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEE
PVFGKINLDTIVEFMKNNRMNGVNLQLQLHKIIWEPSKRGV
EEECCCCHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]