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The map label for this gene is ydaM [C]

Identifier: 226948857

GI number: 226948857

Start: 1797876

End: 1800074

Strand: Direct

Name: ydaM [C]

Synonym: CLM_1759

Alternate gene names: 226948857

Gene position: 1797876-1800074 (Clockwise)

Preceding gene: 226948855

Following gene: 226948858

Centisome position: 43.27

GC content: 28.15

Gene sequence:

>2199_bases
ATGCTTGCAGCAATAATAAAAAAAATTCAATTAATTTTAGAAACTAAAAAAAAGAATACATTTAAATATGAATGTATTAA
AATATGTTTAATGTATATAATTAGCGGATTTATTTGGATTTATTTTTCAGATAAAATTATAAAGAAATTTGTTAATGATA
AAGAGATGTTGATAATTATAAGTACATATAAAGGTTGGTTATATGTTATTATAACTGCACCAATTCTTTATTTAATAATA
AGAAATATTCTAAAAAAAGTTTATTTAGCAGAAAAAAAACTCAATAAAAGCTATGAAGAGTTATTAGCGGTTAATGAAAA
ACTTGAATCCTATGTAAAGCGATTGACTAATTCCAAGGAAGAACTAAAAATTCAATATGATCAAACCATTGAAAGTGAAA
AGAAATTAAGCAAGAGTGAAGAAAGGTATAAAGCCCTTGTAAGTGAAATGCAACAAGGATTAGTACTTTTTCAAGGTAGT
GATAATGAGGAAGGAAAAATTATAAACTATAAACTTTTAGATTCAAATGCAAGTTATGAGAGATTAACAGGATTAAAAAA
AGAAGATATATTAGGTAAAACTCTTTATGAGATATTCCCTAATATGGAAAAGAATCTGATTGAAAAAATCCAAAGAGTAG
CAATAACAGGACAATCTGTGCATTATCAACGCTATATAAAAGAAAAAGATAAATATTATGAAGCAATAGTGTATAGGCCT
AAAAAATTGCAATTTGCAGCAATTTTAACGGATATTACTGAAAGAAAATTTGCAGAGAAGGCCTTGAAAACCAGTGAATA
TAATTTTAGAAATATTTTTGAAAGTTCCTCAGATCCTATACTTATAACTCTAGATAATAAAGTTATTGATTGCAATTTAG
CTATGATCGAATTATTAGGATATGATTCAAAGTCATCTATACTTCATAAAAATCCAGTTCAGTTTTCTCCAGAGAAACAG
CCTAATGGAGAATCTTCTAAAGAAAAAGCTATTCAGGTATATAATATTACTATGAAAAATAAGAAATATAAATTTGAATG
GTGGTTTAAAAGGGTTGATGGTACCTTATTGCCAGTAGAAGTTATGATGACAACTATATTACATAATGGGAAAAAAGTTT
TTCATTCTCTATGCAGAGATATTCGTGAAAGAAAAGAAATGGAAAATAAATTAGAATATTTAAGCTATCATGATCAACTA
ACAGGTTTATATAATAGAAGGTTTTTTGAAAACGAATTAAAGAGACTAGATGTGGAAGAAAATTTACCTTTGACTATTGT
TATGGCAGATGTTAATGGACTAAAGCTTGTAAATGATTCTTTTGGCCATGCCGCAGGAGACGAACTATTAAAAAAAGTAT
CAGAAATTATAAAAAAGGGATGTAGATATAATGATATTATTGCTAGACTTGGGGGAGATGAATTTGTAATTTTACTGCCT
AAGACAGATATATATGAAACAGAACAAATTGTTAAAAATATTAATGCTTTAGCTTTAAAGGAAACAGTAAGTGCTGTTAA
TATATCCATCTCCTTTGGATATGGAACTAAGAAGAAAGAAGAAGAAAAGATTGAAGAAATTTTAAAGAAAGCTGAAGATT
ATATGTATAAGAAAAAGCTTTTTGAGAGTCCAAGTATGAGAGGTAAAACTATAGGTGCTATAATTAGTACCCTTCATGAA
AAAAATAAAAGAGAAGAGGAACACTCTCATAGAGTCTCAATGTTATGCCAAGATATGGGGCATGCTTTAGGATTAACTGA
AAGTGAGACAGAGGAACTAAAAACTATTGGTTTACTTCATGATATAGGAAAAATAGCTATAGAAGAAAATATACTAAACA
AGAGTGAAGAACTTACAGAGGATGAATGGCAAGAAATAAAACGACATTCAGAAATAGGATATAGAATACTTAACACGGTA
AATGATATGTTAGAAATATCAGAGTATGTATTGTATCATCATGAAAGATGGGATGGAAAGGGATATCCTAAAGGTTTAAA
GGGAGAAGAGATACCACTTCAGTCAAGAATAATAACTATAATTGATGCTTATGATGCTATGACTAGCCAAAGAAGTTATA
GAAGCGCTTTACCAGAGGAGAGTGCCATAGAAGAGTTAAAAATAAATGCAGGTACTCAGTTTGATCCAGATCTTGTAAGA
ATATTTATTGAAAAAGTATTGAATAAATCTTTCTATTAA

Upstream 100 bases:

>100_bases
ATTTGTAAGTTACAAGTATGTAAAAAAATAGAGTTATACATATCAAGGAATAATGAATTCAGTGGAAGCTAATGAAACAC
AATAGTAATGGAGGCGTGTC

Downstream 100 bases:

>100_bases
AAAAGTATATTTTTGTACTTTTTAGATTTTCAAAGCTTTAGAATATAGATATATTTTTCGGTCATAATATATTTTGAATA
AAAAATATATTGAAGGAAGT

Product: putative sensory box-containing diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 732; Mature: 732

Protein sequence:

>732_residues
MLAAIIKKIQLILETKKKNTFKYECIKICLMYIISGFIWIYFSDKIIKKFVNDKEMLIIISTYKGWLYVIITAPILYLII
RNILKKVYLAEKKLNKSYEELLAVNEKLESYVKRLTNSKEELKIQYDQTIESEKKLSKSEERYKALVSEMQQGLVLFQGS
DNEEGKIINYKLLDSNASYERLTGLKKEDILGKTLYEIFPNMEKNLIEKIQRVAITGQSVHYQRYIKEKDKYYEAIVYRP
KKLQFAAILTDITERKFAEKALKTSEYNFRNIFESSSDPILITLDNKVIDCNLAMIELLGYDSKSSILHKNPVQFSPEKQ
PNGESSKEKAIQVYNITMKNKKYKFEWWFKRVDGTLLPVEVMMTTILHNGKKVFHSLCRDIRERKEMENKLEYLSYHDQL
TGLYNRRFFENELKRLDVEENLPLTIVMADVNGLKLVNDSFGHAAGDELLKKVSEIIKKGCRYNDIIARLGGDEFVILLP
KTDIYETEQIVKNINALALKETVSAVNISISFGYGTKKKEEEKIEEILKKAEDYMYKKKLFESPSMRGKTIGAIISTLHE
KNKREEEHSHRVSMLCQDMGHALGLTESETEELKTIGLLHDIGKIAIEENILNKSEELTEDEWQEIKRHSEIGYRILNTV
NDMLEISEYVLYHHERWDGKGYPKGLKGEEIPLQSRIITIIDAYDAMTSQRSYRSALPEESAIEELKINAGTQFDPDLVR
IFIEKVLNKSFY

Sequences:

>Translated_732_residues
MLAAIIKKIQLILETKKKNTFKYECIKICLMYIISGFIWIYFSDKIIKKFVNDKEMLIIISTYKGWLYVIITAPILYLII
RNILKKVYLAEKKLNKSYEELLAVNEKLESYVKRLTNSKEELKIQYDQTIESEKKLSKSEERYKALVSEMQQGLVLFQGS
DNEEGKIINYKLLDSNASYERLTGLKKEDILGKTLYEIFPNMEKNLIEKIQRVAITGQSVHYQRYIKEKDKYYEAIVYRP
KKLQFAAILTDITERKFAEKALKTSEYNFRNIFESSSDPILITLDNKVIDCNLAMIELLGYDSKSSILHKNPVQFSPEKQ
PNGESSKEKAIQVYNITMKNKKYKFEWWFKRVDGTLLPVEVMMTTILHNGKKVFHSLCRDIRERKEMENKLEYLSYHDQL
TGLYNRRFFENELKRLDVEENLPLTIVMADVNGLKLVNDSFGHAAGDELLKKVSEIIKKGCRYNDIIARLGGDEFVILLP
KTDIYETEQIVKNINALALKETVSAVNISISFGYGTKKKEEEKIEEILKKAEDYMYKKKLFESPSMRGKTIGAIISTLHE
KNKREEEHSHRVSMLCQDMGHALGLTESETEELKTIGLLHDIGKIAIEENILNKSEELTEDEWQEIKRHSEIGYRILNTV
NDMLEISEYVLYHHERWDGKGYPKGLKGEEIPLQSRIITIIDAYDAMTSQRSYRSALPEESAIEELKINAGTQFDPDLVR
IFIEKVLNKSFY
>Mature_732_residues
MLAAIIKKIQLILETKKKNTFKYECIKICLMYIISGFIWIYFSDKIIKKFVNDKEMLIIISTYKGWLYVIITAPILYLII
RNILKKVYLAEKKLNKSYEELLAVNEKLESYVKRLTNSKEELKIQYDQTIESEKKLSKSEERYKALVSEMQQGLVLFQGS
DNEEGKIINYKLLDSNASYERLTGLKKEDILGKTLYEIFPNMEKNLIEKIQRVAITGQSVHYQRYIKEKDKYYEAIVYRP
KKLQFAAILTDITERKFAEKALKTSEYNFRNIFESSSDPILITLDNKVIDCNLAMIELLGYDSKSSILHKNPVQFSPEKQ
PNGESSKEKAIQVYNITMKNKKYKFEWWFKRVDGTLLPVEVMMTTILHNGKKVFHSLCRDIRERKEMENKLEYLSYHDQL
TGLYNRRFFENELKRLDVEENLPLTIVMADVNGLKLVNDSFGHAAGDELLKKVSEIIKKGCRYNDIIARLGGDEFVILLP
KTDIYETEQIVKNINALALKETVSAVNISISFGYGTKKKEEEKIEEILKKAEDYMYKKKLFESPSMRGKTIGAIISTLHE
KNKREEEHSHRVSMLCQDMGHALGLTESETEELKTIGLLHDIGKIAIEENILNKSEELTEDEWQEIKRHSEIGYRILNTV
NDMLEISEYVLYHHERWDGKGYPKGLKGEEIPLQSRIITIIDAYDAMTSQRSYRSALPEESAIEELKINAGTQFDPDLVR
IFIEKVLNKSFY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HD domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=296, Percent_Identity=26.6891891891892, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788381, Length=211, Percent_Identity=30.8056872037915, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082007, Length=163, Percent_Identity=30.6748466257669, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1786584, Length=216, Percent_Identity=27.7777777777778, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1787262, Length=227, Percent_Identity=27.7533039647577, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI145693134, Length=149, Percent_Identity=33.5570469798658, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1787541, Length=205, Percent_Identity=27.8048780487805, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI87081974, Length=150, Percent_Identity=31.3333333333333, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787816, Length=147, Percent_Identity=27.891156462585, Blast_Score=68, Evalue=3e-12,
Organism=Escherichia coli, GI87081977, Length=101, Percent_Identity=38.6138613861386, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788085, Length=104, Percent_Identity=33.6538461538462, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003607 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 85311; Mature: 85311

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAAIIKKIQLILETKKKNTFKYECIKICLMYIISGFIWIYFSDKIIKKFVNDKEMLIII
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEECHHHHHHHCCCCEEEEEE
STYKGWLYVIITAPILYLIIRNILKKVYLAEKKLNKSYEELLAVNEKLESYVKRLTNSKE
EECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
ELKIQYDQTIESEKKLSKSEERYKALVSEMQQGLVLFQGSDNEEGKIINYKLLDSNASYE
HEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECCCCCHH
RLTGLKKEDILGKTLYEIFPNMEKNLIEKIQRVAITGQSVHYQRYIKEKDKYYEAIVYRP
HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
KKLQFAAILTDITERKFAEKALKTSEYNFRNIFESSSDPILITLDNKVIDCNLAMIELLG
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEECCEEEECHHHHHHHHC
YDSKSSILHKNPVQFSPEKQPNGESSKEKAIQVYNITMKNKKYKFEWWFKRVDGTLLPVE
CCCCCCCCCCCCCCCCCCCCCCCCCCHHCEEEEEEEEECCCEEEHHHHHHHHCCCCCHHH
VMMTTILHNGKKVFHSLCRDIRERKEMENKLEYLSYHDQLTGLYNRRFFENELKRLDVEE
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NLPLTIVMADVNGLKLVNDSFGHAAGDELLKKVSEIIKKGCRYNDIIARLGGDEFVILLP
CCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEC
KTDIYETEQIVKNINALALKETVSAVNISISFGYGTKKKEEEKIEEILKKAEDYMYKKKL
CCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
FESPSMRGKTIGAIISTLHEKNKREEEHSHRVSMLCQDMGHALGLTESETEELKTIGLLH
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
DIGKIAIEENILNKSEELTEDEWQEIKRHSEIGYRILNTVNDMLEISEYVLYHHERWDGK
HHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GYPKGLKGEEIPLQSRIITIIDAYDAMTSQRSYRSALPEESAIEELKINAGTQFDPDLVR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHH
IFIEKVLNKSFY
HHHHHHHHCCCC
>Mature Secondary Structure
MLAAIIKKIQLILETKKKNTFKYECIKICLMYIISGFIWIYFSDKIIKKFVNDKEMLIII
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEECHHHHHHHCCCCEEEEEE
STYKGWLYVIITAPILYLIIRNILKKVYLAEKKLNKSYEELLAVNEKLESYVKRLTNSKE
EECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
ELKIQYDQTIESEKKLSKSEERYKALVSEMQQGLVLFQGSDNEEGKIINYKLLDSNASYE
HEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECCCCCHH
RLTGLKKEDILGKTLYEIFPNMEKNLIEKIQRVAITGQSVHYQRYIKEKDKYYEAIVYRP
HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
KKLQFAAILTDITERKFAEKALKTSEYNFRNIFESSSDPILITLDNKVIDCNLAMIELLG
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEECCEEEECHHHHHHHHC
YDSKSSILHKNPVQFSPEKQPNGESSKEKAIQVYNITMKNKKYKFEWWFKRVDGTLLPVE
CCCCCCCCCCCCCCCCCCCCCCCCCCHHCEEEEEEEEECCCEEEHHHHHHHHCCCCCHHH
VMMTTILHNGKKVFHSLCRDIRERKEMENKLEYLSYHDQLTGLYNRRFFENELKRLDVEE
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NLPLTIVMADVNGLKLVNDSFGHAAGDELLKKVSEIIKKGCRYNDIIARLGGDEFVILLP
CCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEC
KTDIYETEQIVKNINALALKETVSAVNISISFGYGTKKKEEEKIEEILKKAEDYMYKKKL
CCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
FESPSMRGKTIGAIISTLHEKNKREEEHSHRVSMLCQDMGHALGLTESETEELKTIGLLH
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
DIGKIAIEENILNKSEELTEDEWQEIKRHSEIGYRILNTVNDMLEISEYVLYHHERWDGK
HHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GYPKGLKGEEIPLQSRIITIIDAYDAMTSQRSYRSALPEESAIEELKINAGTQFDPDLVR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHH
IFIEKVLNKSFY
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]