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The map label for this gene is ycbG [H]

Identifier: 226948366

GI number: 226948366

Start: 1302164

End: 1302856

Strand: Direct

Name: ycbG [H]

Synonym: CLM_1249

Alternate gene names: 226948366

Gene position: 1302164-1302856 (Clockwise)

Preceding gene: 226948365

Following gene: 226948367

Centisome position: 31.34

GC content: 26.7

Gene sequence:

>693_bases
ATGTTTATGCCAATAAAAAATGCTAAAGTATATGAGCAAGTAATAGAACAAATAAAAACAATGATTATATCTGGAAACTT
ACAAAAAGGAGATAAGCTACCTTCTGAGAGAGAACTGGTAGATCAACTAAAGGTTAGTAGAACATCTATAAGAGAGGCTT
TAAGAGCTTTAGAAATAGTTGGACTAATTAAATGTAAGCAGGGAGAAGGAAATTTTATTAGAGACAATTTTGATAACAGC
TTATTTGAACCTTTGTCTTTAGTTTTTATGCTAGAAAGGAGCAATAAAGAGGACATAATTGAGGTAAGAAGAATAATAGA
AGTTGAGGCAGCAGCATTAGCAGCTAAAAGAATTACTAAAGACCAGTTAAAAAAGTTAGAATACATAATATATGAATTTA
AAAATAGTGAAGATGAAAAGATTCTTGTAAATTTAGATAAGAATTTTCACTATGAAATAGCCCAAGCATCTAATAATTTT
ATACTTTTAAATATAATCAATTCTTGTTCAACTCTTATAGATTCTTTAATAAAAAATGCTAGGTATAAAATTATGAAAAA
TGTTGAAAACAAAAAAGAACTAGTAGATCAACATGAAAAAATATATTTAGCTTTAAAGGAAAAGGATAGTGAATTAGCTT
CCAAATTAATGAAAGAACATTTGGAGTTTAGTGGTAAATTTTTGGAATTATAA

Upstream 100 bases:

>100_bases
ATCCATAATTTTTATTTGATTTTTCATATGTTGTAAATAATGTGGTATACTAAAGTTATATATTTAACTATATAATTTTT
ATAAAGAAAGGGATTATATA

Downstream 100 bases:

>100_bases
AAAATAAAATTATATAAAATATAGGAGAAGTTAATATTAGTTTTTAAGTTTAAAATAAAATTAATATTAACTTTTTATAA
GTTATTATTAATATGGGTTA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MFMPIKNAKVYEQVIEQIKTMIISGNLQKGDKLPSERELVDQLKVSRTSIREALRALEIVGLIKCKQGEGNFIRDNFDNS
LFEPLSLVFMLERSNKEDIIEVRRIIEVEAAALAAKRITKDQLKKLEYIIYEFKNSEDEKILVNLDKNFHYEIAQASNNF
ILLNIINSCSTLIDSLIKNARYKIMKNVENKKELVDQHEKIYLALKEKDSELASKLMKEHLEFSGKFLEL

Sequences:

>Translated_230_residues
MFMPIKNAKVYEQVIEQIKTMIISGNLQKGDKLPSERELVDQLKVSRTSIREALRALEIVGLIKCKQGEGNFIRDNFDNS
LFEPLSLVFMLERSNKEDIIEVRRIIEVEAAALAAKRITKDQLKKLEYIIYEFKNSEDEKILVNLDKNFHYEIAQASNNF
ILLNIINSCSTLIDSLIKNARYKIMKNVENKKELVDQHEKIYLALKEKDSELASKLMKEHLEFSGKFLEL
>Mature_230_residues
MFMPIKNAKVYEQVIEQIKTMIISGNLQKGDKLPSERELVDQLKVSRTSIREALRALEIVGLIKCKQGEGNFIRDNFDNS
LFEPLSLVFMLERSNKEDIIEVRRIIEVEAAALAAKRITKDQLKKLEYIIYEFKNSEDEKILVNLDKNFHYEIAQASNNF
ILLNIINSCSTLIDSLIKNARYKIMKNVENKKELVDQHEKIYLALKEKDSELASKLMKEHLEFSGKFLEL

Specific function: May Be A Regulatory Protein For The Lct Genes. [C]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790032, Length=219, Percent_Identity=32.8767123287671, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1786303, Length=225, Percent_Identity=29.3333333333333, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1789353, Length=225, Percent_Identity=28.4444444444444, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790780, Length=246, Percent_Identity=26.4227642276423, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI87082208, Length=234, Percent_Identity=28.6324786324786, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI48994955, Length=209, Percent_Identity=24.4019138755981, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789621, Length=227, Percent_Identity=27.7533039647577, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787821, Length=217, Percent_Identity=25.8064516129032, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26727; Mature: 26727

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMPIKNAKVYEQVIEQIKTMIISGNLQKGDKLPSERELVDQLKVSRTSIREALRALEIV
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GLIKCKQGEGNFIRDNFDNSLFEPLSLVFMLERSNKEDIIEVRRIIEVEAAALAAKRITK
HHHEEECCCCCEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DQLKKLEYIIYEFKNSEDEKILVNLDKNFHYEIAQASNNFILLNIINSCSTLIDSLIKNA
HHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHH
RYKIMKNVENKKELVDQHEKIYLALKEKDSELASKLMKEHLEFSGKFLEL
HHHHHHCCHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFMPIKNAKVYEQVIEQIKTMIISGNLQKGDKLPSERELVDQLKVSRTSIREALRALEIV
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GLIKCKQGEGNFIRDNFDNSLFEPLSLVFMLERSNKEDIIEVRRIIEVEAAALAAKRITK
HHHEEECCCCCEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DQLKKLEYIIYEFKNSEDEKILVNLDKNFHYEIAQASNNFILLNIINSCSTLIDSLIKNA
HHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHH
RYKIMKNVENKKELVDQHEKIYLALKEKDSELASKLMKEHLEFSGKFLEL
HHHHHHCCHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704254; 9384377 [H]