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The map label for this gene is ywqM [H]

Identifier: 226948302

GI number: 226948302

Start: 1224593

End: 1225486

Strand: Direct

Name: ywqM [H]

Synonym: CLM_1182

Alternate gene names: 226948302

Gene position: 1224593-1225486 (Clockwise)

Preceding gene: 226948300

Following gene: 226948303

Centisome position: 29.47

GC content: 28.19

Gene sequence:

>894_bases
ATGGAGATTAGGCACTTGCAGACATTTATAACCATAGTTGAACTTGAAGGATTTACAAAAGCAGCAGAACATTTAGGATA
TGCTCAGTCCACTATAACATCTCACATTCAAATTTTAGAAAATGAATTAGGGGAAGTTTTATTTGATCGTTTAGGTAAAA
AAATAGTTTTAACTAATGTAGGTCAAAAGTTAGTTCCATATGCCACACAAATGCTGCATGTATATAAAGAAATTAAGAAC
ATAACATCAGAAGAGAAAGGCATATATGGTGATTTAATTATTGGAGCAGGGGAATCACTATCAATATATCGTTTAGGTAA
AATCTTAAAGGAATACAAAAAGAAATTTCCAAAGGTAAACATTATTTTAAAGAATTCAATTTGTAGTGATTTAAGGAGCA
AATTACATAGTGGAGAGTTAGACATTATATTCACTATTGAACCTGAAATTATGGATAAAGATTTGATTGTCAAAAATTTA
AAGAATGAAAATATGGTTATTATTGGTGCACCAGATGCAGACTTAGAATTTTTATCAACAAATTATAAAGGTGGAATGGC
AAGAGAAAGTATCATATTTAGTGAAAAAGGATGTAGTTTTAGAATAGCTTTTGAAAAATACCTAAAACAGAAAAAAATAA
AATATGTAAATCCTTTAGAATTTTCAAGCATAGAAGCTACTAAAAAGTGTGTAATGAATGGTTTAGGCATTTCACTTTTG
CCTTTTTATGCAGTTAAAAATGAGATAAAGGAAGGAACTCTTAAGAGTATAGAACTAAAAGAACCATTTGATAAGTTTAG
AACTCAACTTGCATATCATAAAAACAAAAGTATATCTCTACCAATGAGTAAATTAATAGAAATTACATTAAAAAATTCTG
CTAAGTGGAGATAA

Upstream 100 bases:

>100_bases
GCTATATGTGCTATCAGTAAAATTGAAATAAATGAAATTAATAATCGAAATATATGATATCATAATATTTGTATATTTAA
AGTATAAAGGAGTGAGATTA

Downstream 100 bases:

>100_bases
AGTATAGAATAGATTCATAAATTTCATTTAAATATTATAGAATTAGGATTCTACTTTCTTTATTTTCTAATATGTCATAA
TGGTGTCATATTTTATATTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MEIRHLQTFITIVELEGFTKAAEHLGYAQSTITSHIQILENELGEVLFDRLGKKIVLTNVGQKLVPYATQMLHVYKEIKN
ITSEEKGIYGDLIIGAGESLSIYRLGKILKEYKKKFPKVNIILKNSICSDLRSKLHSGELDIIFTIEPEIMDKDLIVKNL
KNENMVIIGAPDADLEFLSTNYKGGMARESIIFSEKGCSFRIAFEKYLKQKKIKYVNPLEFSSIEATKKCVMNGLGISLL
PFYAVKNEIKEGTLKSIELKEPFDKFRTQLAYHKNKSISLPMSKLIEITLKNSAKWR

Sequences:

>Translated_297_residues
MEIRHLQTFITIVELEGFTKAAEHLGYAQSTITSHIQILENELGEVLFDRLGKKIVLTNVGQKLVPYATQMLHVYKEIKN
ITSEEKGIYGDLIIGAGESLSIYRLGKILKEYKKKFPKVNIILKNSICSDLRSKLHSGELDIIFTIEPEIMDKDLIVKNL
KNENMVIIGAPDADLEFLSTNYKGGMARESIIFSEKGCSFRIAFEKYLKQKKIKYVNPLEFSSIEATKKCVMNGLGISLL
PFYAVKNEIKEGTLKSIELKEPFDKFRTQLAYHKNKSISLPMSKLIEITLKNSAKWR
>Mature_297_residues
MEIRHLQTFITIVELEGFTKAAEHLGYAQSTITSHIQILENELGEVLFDRLGKKIVLTNVGQKLVPYATQMLHVYKEIKN
ITSEEKGIYGDLIIGAGESLSIYRLGKILKEYKKKFPKVNIILKNSICSDLRSKLHSGELDIIFTIEPEIMDKDLIVKNL
KNENMVIIGAPDADLEFLSTNYKGGMARESIIFSEKGCSFRIAFEKYLKQKKIKYVNPLEFSSIEATKKCVMNGLGISLL
PFYAVKNEIKEGTLKSIELKEPFDKFRTQLAYHKNKSISLPMSKLIEITLKNSAKWR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=290, Percent_Identity=31.3793103448276, Blast_Score=157, Evalue=6e-40,
Organism=Escherichia coli, GI1788481, Length=288, Percent_Identity=25.6944444444444, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1790399, Length=280, Percent_Identity=26.0714285714286, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790208, Length=252, Percent_Identity=26.984126984127, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787806, Length=298, Percent_Identity=22.1476510067114, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788748, Length=287, Percent_Identity=20.5574912891986, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1788887, Length=263, Percent_Identity=28.1368821292776, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI157672245, Length=292, Percent_Identity=22.2602739726027, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI48994962, Length=156, Percent_Identity=30.1282051282051, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787589, Length=279, Percent_Identity=24.3727598566308, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788297, Length=253, Percent_Identity=21.7391304347826, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787530, Length=305, Percent_Identity=20.655737704918, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33828; Mature: 33828

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIRHLQTFITIVELEGFTKAAEHLGYAQSTITSHIQILENELGEVLFDRLGKKIVLTNV
CCHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
GQKLVPYATQMLHVYKEIKNITSEEKGIYGDLIIGAGESLSIYRLGKILKEYKKKFPKVN
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCEEE
IILKNSICSDLRSKLHSGELDIIFTIEPEIMDKDLIVKNLKNENMVIIGAPDADLEFLST
EEECHHHHHHHHHHHCCCCEEEEEEECCCHHCHHHHHHHCCCCCEEEEECCCCCHHHEEC
NYKGGMARESIIFSEKGCSFRIAFEKYLKQKKIKYVNPLEFSSIEATKKCVMNGLGISLL
CCCCCCCHHHEEEECCCCEEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHH
PFYAVKNEIKEGTLKSIELKEPFDKFRTQLAYHKNKSISLPMSKLIEITLKNSAKWR
HHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHEEEECCCCCCC
>Mature Secondary Structure
MEIRHLQTFITIVELEGFTKAAEHLGYAQSTITSHIQILENELGEVLFDRLGKKIVLTNV
CCHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
GQKLVPYATQMLHVYKEIKNITSEEKGIYGDLIIGAGESLSIYRLGKILKEYKKKFPKVN
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCEEE
IILKNSICSDLRSKLHSGELDIIFTIEPEIMDKDLIVKNLKNENMVIIGAPDADLEFLST
EEECHHHHHHHHHHHCCCCEEEEEEECCCHHCHHHHHHHCCCCCEEEEECCCCCHHHEEC
NYKGGMARESIIFSEKGCSFRIAFEKYLKQKKIKYVNPLEFSSIEATKKCVMNGLGISLL
CCCCCCCHHHEEEECCCCEEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHH
PFYAVKNEIKEGTLKSIELKEPFDKFRTQLAYHKNKSISLPMSKLIEITLKNSAKWR
HHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]