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The map label for this gene is yvdD [H]

Identifier: 226948136

GI number: 226948136

Start: 1061872

End: 1062450

Strand: Reverse

Name: yvdD [H]

Synonym: CLM_1004

Alternate gene names: 226948136

Gene position: 1062450-1061872 (Counterclockwise)

Preceding gene: 226948137

Following gene: 226948135

Centisome position: 25.57

GC content: 32.12

Gene sequence:

>579_bases
ATGAAAAGAATCTGTGTTTATTCTGGCTCTAATCTAGGTTTACGTTCTGAATATAAAGAAAGTGCTAAACTACTAGGTAA
AATATTAGCTAAAAACGAAATTGAATTAGTATATGGTGGTTCAAGAATAGGTCTTATGGGAGAGATATCAAATGAAGTTT
TAAGAAATAACGGAAAAGTTATTGGGGTTATGCCTAAAGGGCTCTTCTCAGGTGAAATGGTTCATGAAAATTTGACTAAA
CTTATTGAAGTTGAAAACATGCATGAAAGGAAACAAACTATGGCTGAGCTTTCTGATGGATTTATAGCACTTCCTGGTGG
GCTTGGTACTTTTGAAGAACTGTTTGAAGTATTTAGTTGGGCTCAGCTTGGTATTCATAAAAAGCCTATTGGTATATTAA
ATATATCAAATTTCTTTGACCCGCTTTTACATATGATTAAAAACGCTTGTACTGAAGGTTTCATGAATGAATCAAATATT
AAGCTTATTTCAGTTTCAGATACTCCTTCAGAATTAATCAAACAAATGAAAAACTATGTGCCACCTCTAATGGAAAATAA
ATGGCGTGAATTAGTATAA

Upstream 100 bases:

>100_bases
TATTTTCTTAGTCTTAGGCGTTTATATTATTCAAACTCATTAATTAGGGATTTATATTTAAATCTTAATCAATAAAACAT
CATTATAGGAGGTAATTTTT

Downstream 100 bases:

>100_bases
AAATATCTTCATTTTCTACCAAAGGCACTTATAAGAAAAATGTAGACAGTTGACTATTATATGTATCACACTTTATTTTA
TTATTTGCTGTAAAGGTTGT

Product: decarboxylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MKRICVYSGSNLGLRSEYKESAKLLGKILAKNEIELVYGGSRIGLMGEISNEVLRNNGKVIGVMPKGLFSGEMVHENLTK
LIEVENMHERKQTMAELSDGFIALPGGLGTFEELFEVFSWAQLGIHKKPIGILNISNFFDPLLHMIKNACTEGFMNESNI
KLISVSDTPSELIKQMKNYVPPLMENKWRELV

Sequences:

>Translated_192_residues
MKRICVYSGSNLGLRSEYKESAKLLGKILAKNEIELVYGGSRIGLMGEISNEVLRNNGKVIGVMPKGLFSGEMVHENLTK
LIEVENMHERKQTMAELSDGFIALPGGLGTFEELFEVFSWAQLGIHKKPIGILNISNFFDPLLHMIKNACTEGFMNESNI
KLISVSDTPSELIKQMKNYVPPLMENKWRELV
>Mature_192_residues
MKRICVYSGSNLGLRSEYKESAKLLGKILAKNEIELVYGGSRIGLMGEISNEVLRNNGKVIGVMPKGLFSGEMVHENLTK
LIEVENMHERKQTMAELSDGFIALPGGLGTFEELFEVFSWAQLGIHKKPIGILNISNFFDPLLHMIKNACTEGFMNESNI
KLISVSDTPSELIKQMKNYVPPLMENKWRELV

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6322406, Length=207, Percent_Identity=39.6135265700483, Blast_Score=152, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005269 [H]

Pfam domain/function: PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 21547; Mature: 21547

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRICVYSGSNLGLRSEYKESAKLLGKILAKNEIELVYGGSRIGLMGEISNEVLRNNGKV
CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEHHHHHHHHHHHCCCCE
IGVMPKGLFSGEMVHENLTKLIEVENMHERKQTMAELSDGFIALPGGLGTFEELFEVFSW
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHH
AQLGIHKKPIGILNISNFFDPLLHMIKNACTEGFMNESNIKLISVSDTPSELIKQMKNYV
HHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHC
PPLMENKWRELV
CCHHHHHHHHCC
>Mature Secondary Structure
MKRICVYSGSNLGLRSEYKESAKLLGKILAKNEIELVYGGSRIGLMGEISNEVLRNNGKV
CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEHHHHHHHHHHHCCCCE
IGVMPKGLFSGEMVHENLTKLIEVENMHERKQTMAELSDGFIALPGGLGTFEELFEVFSW
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHH
AQLGIHKKPIGILNISNFFDPLLHMIKNACTEGFMNESNIKLISVSDTPSELIKQMKNYV
HHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHC
PPLMENKWRELV
CCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]