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The map label for this gene is ydfL [H]

Identifier: 226948127

GI number: 226948127

Start: 1052829

End: 1053656

Strand: Reverse

Name: ydfL [H]

Synonym: CLM_0995

Alternate gene names: 226948127

Gene position: 1053656-1052829 (Counterclockwise)

Preceding gene: 226948131

Following gene: 226948126

Centisome position: 25.36

GC content: 31.52

Gene sequence:

>828_bases
ATGCAGGGATTATTACGGATTGGACAAGTAAGTAAATTATATGGTATATCACTTGATACTTTACGTCACTACGACCGAAA
AGGATTGTTAAAGCCAATTGTTGATCCTCAAAATGATTATCGTTACTATTCCTTAGAACATCTGGATATCCTCGAAATGA
TTTTACTTGGAAAATATATGAAAATCCCCTTAGATCAAATGAAAGAAAGAATAAATTCGAAAAGTATCGATGGATATTTA
TCAATGGTAAAAGAACAAAAGGAACGTATAAATGAAGAAAAAAGGTTATTAAATCAACTTGATCAATATGCTGAGGATAT
GCTAGAGTTACTTACGACTATTTCTAAGTTTGAAAACGATTACACATTTTCTACTGCTTCAGTTTATAAAGAAATTGATA
TTACCATCTATAGAATAGATTTAGAAACATTACTGCACGAAGATACTAAATCACAGCAAACAGAAGGGATAGAATCTTTG
GAGCAGTGGGCTTTCTATCATAGCGAGCCGAATGGAACAATAGTAGAGAATGACGAGGTAATTGGTTTTTCATTTGCTGA
TAGTACGATAACTACAACTATACTTCAAAAGCAATTTATGTTTGCAGCTGAACATAACATTGTAGCACAGCATCGTGTAA
CAGGATATTATTCCAATATTATGTTCTGGGGTGTAAAAAAGGATTTAATGGAATATCTATATAAATTATGCTGTCATTTT
GACTTACACAATTCTGCCCTATTAGTAAAATACAACTTTGCACTACTTCATAAAAGTATGGAACATGAATATTTTGTAGA
AATATACTTTCCCCAAAATCCAGTTTGA

Upstream 100 bases:

>100_bases
CCCCTTTACAAATTAAATTTTTTTAGGTACTATAATTAAAATAAACCCTTGATCTGCTCAATAGTCAATTGGTGTTATTA
AGTTTTTTAGGGAGGATAAA

Downstream 100 bases:

>100_bases
AGACCAATACATTCTATTTGAATAATCAATATCAAAATAATCATGCCAATAAAATGGCGAAAATCATAATAACAACTCTG
AGTGTTCTAGTAATACTAGC

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MQGLLRIGQVSKLYGISLDTLRHYDRKGLLKPIVDPQNDYRYYSLEHLDILEMILLGKYMKIPLDQMKERINSKSIDGYL
SMVKEQKERINEEKRLLNQLDQYAEDMLELLTTISKFENDYTFSTASVYKEIDITIYRIDLETLLHEDTKSQQTEGIESL
EQWAFYHSEPNGTIVENDEVIGFSFADSTITTTILQKQFMFAAEHNIVAQHRVTGYYSNIMFWGVKKDLMEYLYKLCCHF
DLHNSALLVKYNFALLHKSMEHEYFVEIYFPQNPV

Sequences:

>Translated_275_residues
MQGLLRIGQVSKLYGISLDTLRHYDRKGLLKPIVDPQNDYRYYSLEHLDILEMILLGKYMKIPLDQMKERINSKSIDGYL
SMVKEQKERINEEKRLLNQLDQYAEDMLELLTTISKFENDYTFSTASVYKEIDITIYRIDLETLLHEDTKSQQTEGIESL
EQWAFYHSEPNGTIVENDEVIGFSFADSTITTTILQKQFMFAAEHNIVAQHRVTGYYSNIMFWGVKKDLMEYLYKLCCHF
DLHNSALLVKYNFALLHKSMEHEYFVEIYFPQNPV
>Mature_275_residues
MQGLLRIGQVSKLYGISLDTLRHYDRKGLLKPIVDPQNDYRYYSLEHLDILEMILLGKYMKIPLDQMKERINSKSIDGYL
SMVKEQKERINEEKRLLNQLDQYAEDMLELLTTISKFENDYTFSTASVYKEIDITIYRIDLETLLHEDTKSQQTEGIESL
EQWAFYHSEPNGTIVENDEVIGFSFADSTITTTILQKQFMFAAEHNIVAQHRVTGYYSNIMFWGVKKDLMEYLYKLCCHF
DLHNSALLVKYNFALLHKSMEHEYFVEIYFPQNPV

Specific function: Copper responsive transcription regulator [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 32467; Mature: 32467

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGLLRIGQVSKLYGISLDTLRHYDRKGLLKPIVDPQNDYRYYSLEHLDILEMILLGKYM
CCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
KIPLDQMKERINSKSIDGYLSMVKEQKERINEEKRLLNQLDQYAEDMLELLTTISKFEND
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
YTFSTASVYKEIDITIYRIDLETLLHEDTKSQQTEGIESLEQWAFYHSEPNGTIVENDEV
CCCHHHHHHHEEEEEEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCE
IGFSFADSTITTTILQKQFMFAAEHNIVAQHRVTGYYSNIMFWGVKKDLMEYLYKLCCHF
EEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHCC
DLHNSALLVKYNFALLHKSMEHEYFVEIYFPQNPV
CCCCCEEEEEEHHHHHHHHCCCEEEEEEEECCCCC
>Mature Secondary Structure
MQGLLRIGQVSKLYGISLDTLRHYDRKGLLKPIVDPQNDYRYYSLEHLDILEMILLGKYM
CCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
KIPLDQMKERINSKSIDGYLSMVKEQKERINEEKRLLNQLDQYAEDMLELLTTISKFEND
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
YTFSTASVYKEIDITIYRIDLETLLHEDTKSQQTEGIESLEQWAFYHSEPNGTIVENDEV
CCCHHHHHHHEEEEEEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCE
IGFSFADSTITTTILQKQFMFAAEHNIVAQHRVTGYYSNIMFWGVKKDLMEYLYKLCCHF
EEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHCC
DLHNSALLVKYNFALLHKSMEHEYFVEIYFPQNPV
CCCCCEEEEEEHHHHHHHHCCCEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]