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The map label for this gene is ycbL [H]

Identifier: 226948065

GI number: 226948065

Start: 984315

End: 985007

Strand: Direct

Name: ycbL [H]

Synonym: CLM_0926

Alternate gene names: 226948065

Gene position: 984315-985007 (Clockwise)

Preceding gene: 226948064

Following gene: 226948066

Centisome position: 23.69

GC content: 27.71

Gene sequence:

>693_bases
ATGAATAAAGACATTAAAATATTAGTTGTTGAAGACAATAATGATATAAATAAGTTATTATGCGATATGTTAAGACAAAG
CGAATATATTACTAAATCAGCTTATTCCGGAACAGAAGCTTTAATATATTTAAAAGAATATGATTGGGATATGGTTTTAT
TGGATTTAATGTTACCGGGGATGGATGGTAAAGAACTTTTATCTAATATAAGAAAAAGTAAACCTATGCCTGTAATAATA
ATTTCAGCTAAGGAAGAAAAGGATATCAAAATAGAAACCTTAAGAATGGGAGCAGATGATTATATAACAAAACCCTTTGA
TATAGATGAGGTGTCAGCTAGAATAGATTCCCACCTTAGAAGGTATAAAGAATTTTCCAATATAACACCACAAAATTTAT
TAAAATATAAAGAAATATCTCTTAACAAAGATACTAGAGAAGTCTTTATATATAACAAACAGATAATGTTAACTACTAGA
GAATTTGATATTTTACAGCTTTTAATGGGTTATCCTAAAAAGGTTTTTACTAAGTCTAATTTATTTGAAAGCGTATGGAG
CAGTGAGTATTTGTGTGATGATAATACTATTAATGTACATATAAGTAATTTAAGAAATAAGTTATCCAAAGCAGGCACAG
AGAATGAATATATCCAAACTATTTGGGGAATTGGGTACAAGCTAGATAGCTAA

Upstream 100 bases:

>100_bases
ATATTTAAAATTAAGTTTTTATTTTTTGTCTACCTACTATACCTGTTATAATAACAATAAGGGCTAAGGTAAATATTAAC
TATATTAGGGGGGAGTATTA

Downstream 100 bases:

>100_bases
TATTAACTTTTTACTTAAGACTTTCTTAAGGTTTTTCTTTATAATTCATTATGAATTAGGTTTTAATATTAAATATGTAG
TAAGGTTATCAACATGTTGA

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MNKDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPGMDGKELLSNIRKSKPMPVII
ISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKEFSNITPQNLLKYKEISLNKDTREVFIYNKQIMLTTR
EFDILQLLMGYPKKVFTKSNLFESVWSSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLDS

Sequences:

>Translated_230_residues
MNKDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPGMDGKELLSNIRKSKPMPVII
ISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKEFSNITPQNLLKYKEISLNKDTREVFIYNKQIMLTTR
EFDILQLLMGYPKKVFTKSNLFESVWSSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLDS
>Mature_230_residues
MNKDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPGMDGKELLSNIRKSKPMPVII
ISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKEFSNITPQNLLKYKEISLNKDTREVFIYNKQIMLTTR
EFDILQLLMGYPKKVFTKSNLFESVWSSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLDS

Specific function: Member of the two-component regulatory system ycbM/ycbL [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788394, Length=225, Percent_Identity=34.2222222222222, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789809, Length=230, Percent_Identity=34.7826086956522, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI1786599, Length=228, Percent_Identity=31.140350877193, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87082012, Length=224, Percent_Identity=30.3571428571429, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=30.6306306306306, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1789402, Length=229, Percent_Identity=33.6244541484716, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1790860, Length=223, Percent_Identity=32.2869955156951, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1790552, Length=225, Percent_Identity=33.3333333333333, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=28.3185840707965, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1787375, Length=223, Percent_Identity=31.8385650224215, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI2367329, Length=225, Percent_Identity=31.5555555555556, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=27.3127753303965, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI145693140, Length=228, Percent_Identity=26.3157894736842, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790299, Length=150, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787229, Length=228, Percent_Identity=25.8771929824561, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788550, Length=108, Percent_Identity=35.1851851851852, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790437, Length=128, Percent_Identity=34.375, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI145693157, Length=124, Percent_Identity=33.0645161290323, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788191, Length=109, Percent_Identity=32.1100917431193, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26876; Mature: 26876

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPG
CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEHHCCC
MDGKELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLR
CCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCCHHCCCCCCHHHHHHHHHHHHH
RYKEFSNITPQNLLKYKEISLNKDTREVFIYNKQIMLTTREFDILQLLMGYPKKVFTKSN
HHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCEEEEEECHHHHHHHHHCCCHHHHHHHH
LFESVWSSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLDS
HHHHHHCCCEEECCCEEEEEHHHHHHHHHHCCCCHHHHHHHHCCCEEECC
>Mature Secondary Structure
MNKDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPG
CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEHHCCC
MDGKELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLR
CCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCCHHCCCCCCHHHHHHHHHHHHH
RYKEFSNITPQNLLKYKEISLNKDTREVFIYNKQIMLTTREFDILQLLMGYPKKVFTKSN
HHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCEEEEEECHHHHHHHHHCCCHHHHHHHH
LFESVWSSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLDS
HHHHHHCCCEEECCCEEEEEHHHHHHHHHHCCCCHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704254; 9384377 [H]