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The map label for this gene is lyc [H]

Identifier: 226948038

GI number: 226948038

Start: 961128

End: 962078

Strand: Direct

Name: lyc [H]

Synonym: CLM_0899

Alternate gene names: 226948038

Gene position: 961128-962078 (Clockwise)

Preceding gene: 226948037

Following gene: 226948039

Centisome position: 23.13

GC content: 32.39

Gene sequence:

>951_bases
ATGTTAAAGGGGATAGATGTATCAGAGCACCAAGGAGAAATTGGCTGGAAGGCTGTAAAAAATAGTGGAATACAATTTGC
TATTTTAAGAGCTGGTTATGGTAAAAATAATATAGATAAACAATTTATAAATAATGCAAATGGATGTACAAGTGTAGGAA
TGCCATTTGGACTATATTGGTTTAGTTATGCTTATACAGAGAATATGGCAAGAAAAGAAGCACAATATTGTGTAGCTCAA
GCAAAAAAGTATAAAATAAGTTATCCTATTTGTTATGATCTTGAGTATGATACTATAAGATATGCTAATAATTACGGAGT
AACTATTACAAAATCTTTAGCTACTAAAATGGTTCATGCATTTTGTCAAGAAGTAGAAAGAAACGGATACTTCGCAATGA
ATTATTCTAATCAAGATTTTTTATTAAACAAATTTGATAGCAATTTATTAAAGAGATATGCATTGTGGTATGCTTGGTAT
AATAATAGCTTAAATAGAAAGTGTGGTATATGGCAATATAGTGAAAATGGAAGAGTACCAGGAATAGCTGGTGCAGCTGT
AGATATGAACTATTGCTATTTAAACATGCCAGGAGCATTTAATACAAGTCCAAATAAGAACACATTTAGAGGAGGGCATT
ATCTAATAAGAGAACTCCAACAAGAAATAAACTCTCAAGGGCTTGGAGAAGTTGTAGTTGATGGAATAGCAGGACAGGCA
ACTATTAATAGTGCACCAGTTTGTAAACAAGGTGCAAGAGGTGGGATAACAAAAGTTATACAACAGATGCTTATAAGCAT
AGGTTATCCAGTTGGAAGTCATGGAGCAGATGGAGTCTTTGGTGATAGTACAGTAACAGCAATAAAAGCATTTCAAAGAG
ATTGCCACTTAGTAGCAGATGGAATTGTAGGAAAAGAAACATGGAAAGCATTATTTAGAAATTTAAAATAA

Upstream 100 bases:

>100_bases
TTTAAAATTAAAAAATAAACTAAATAATTTAAATAAAATCATACATTTTCTTTTTTATTATGAAAGATATAACTATGAGA
AAAATTTAGGAGGAGTGTAT

Downstream 100 bases:

>100_bases
ATATCAAAAAGAGGGTAGTTCCTTAATTGGAGCTACCTTTTCTTTTTATTTTCAAAAGTATAAATATTATATTGCAATTT
TCTTATTCAACAAGGGAAGG

Product: LycA

Products: NA

Alternate protein names: 1,4-beta-N-acetylmuramidase; Autolysin [H]

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MLKGIDVSEHQGEIGWKAVKNSGIQFAILRAGYGKNNIDKQFINNANGCTSVGMPFGLYWFSYAYTENMARKEAQYCVAQ
AKKYKISYPICYDLEYDTIRYANNYGVTITKSLATKMVHAFCQEVERNGYFAMNYSNQDFLLNKFDSNLLKRYALWYAWY
NNSLNRKCGIWQYSENGRVPGIAGAAVDMNYCYLNMPGAFNTSPNKNTFRGGHYLIRELQQEINSQGLGEVVVDGIAGQA
TINSAPVCKQGARGGITKVIQQMLISIGYPVGSHGADGVFGDSTVTAIKAFQRDCHLVADGIVGKETWKALFRNLK

Sequences:

>Translated_316_residues
MLKGIDVSEHQGEIGWKAVKNSGIQFAILRAGYGKNNIDKQFINNANGCTSVGMPFGLYWFSYAYTENMARKEAQYCVAQ
AKKYKISYPICYDLEYDTIRYANNYGVTITKSLATKMVHAFCQEVERNGYFAMNYSNQDFLLNKFDSNLLKRYALWYAWY
NNSLNRKCGIWQYSENGRVPGIAGAAVDMNYCYLNMPGAFNTSPNKNTFRGGHYLIRELQQEINSQGLGEVVVDGIAGQA
TINSAPVCKQGARGGITKVIQQMLISIGYPVGSHGADGVFGDSTVTAIKAFQRDCHLVADGIVGKETWKALFRNLK
>Mature_316_residues
MLKGIDVSEHQGEIGWKAVKNSGIQFAILRAGYGKNNIDKQFINNANGCTSVGMPFGLYWFSYAYTENMARKEAQYCVAQ
AKKYKISYPICYDLEYDTIRYANNYGVTITKSLATKMVHAFCQEVERNGYFAMNYSNQDFLLNKFDSNLLKRYALWYAWY
NNSLNRKCGIWQYSENGRVPGIAGAAVDMNYCYLNMPGAFNTSPNKNTFRGGHYLIRELQQEINSQGLGEVVVDGIAGQA
TINSAPVCKQGARGGITKVIQQMLISIGYPVGSHGADGVFGDSTVTAIKAFQRDCHLVADGIVGKETWKALFRNLK

Specific function: Unknown

COG id: COG3757

COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)

Gene ontology:

Cell location: Secreted. Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 25 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002053
- InterPro:   IPR008270
- InterPro:   IPR017853
- InterPro:   IPR018077
- InterPro:   IPR013781
- InterPro:   IPR002477 [H]

Pfam domain/function: PF01183 Glyco_hydro_25; PF01471 PG_binding_1 [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 35276; Mature: 35276

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKGIDVSEHQGEIGWKAVKNSGIQFAILRAGYGKNNIDKQFINNANGCTSVGMPFGLYW
CCCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCHHHHH
FSYAYTENMARKEAQYCVAQAKKYKISYPICYDLEYDTIRYANNYGVTITKSLATKMVHA
HHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCEEEEECCCCEEEEHHHHHHHHHH
FCQEVERNGYFAMNYSNQDFLLNKFDSNLLKRYALWYAWYNNSLNRKCGIWQYSENGRVP
HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC
GIAGAAVDMNYCYLNMPGAFNTSPNKNTFRGGHYLIRELQQEINSQGLGEVVVDGIAGQA
CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCCC
TINSAPVCKQGARGGITKVIQQMLISIGYPVGSHGADGVFGDSTVTAIKAFQRDCHLVAD
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
GIVGKETWKALFRNLK
CCCCHHHHHHHHHCCC
>Mature Secondary Structure
MLKGIDVSEHQGEIGWKAVKNSGIQFAILRAGYGKNNIDKQFINNANGCTSVGMPFGLYW
CCCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCHHHHH
FSYAYTENMARKEAQYCVAQAKKYKISYPICYDLEYDTIRYANNYGVTITKSLATKMVHA
HHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCEEEEECCCCEEEEHHHHHHHHHH
FCQEVERNGYFAMNYSNQDFLLNKFDSNLLKRYALWYAWYNNSLNRKCGIWQYSENGRVP
HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC
GIAGAAVDMNYCYLNMPGAFNTSPNKNTFRGGHYLIRELQQEINSQGLGEVVVDGIAGQA
CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCCC
TINSAPVCKQGARGGITKVIQQMLISIGYPVGSHGADGVFGDSTVTAIKAFQRDCHLVAD
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
GIVGKETWKALFRNLK
CCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916274; 11466286; 1599233; 1645127 [H]