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The map label for this gene is ydeE [H]

Identifier: 226948013

GI number: 226948013

Start: 935340

End: 936212

Strand: Direct

Name: ydeE [H]

Synonym: CLM_0874

Alternate gene names: 226948013

Gene position: 935340-936212 (Clockwise)

Preceding gene: 226948012

Following gene: 226948014

Centisome position: 22.51

GC content: 34.25

Gene sequence:

>873_bases
ATGGATTCGCTGAAAAGAATGAATGATTCAATAAATTATATTGAAGAGAATCTTGATGGTGAAATTGATTTTAAAGAAGT
AGCAAGGTTAGCATTTTGCTCGGAATATCATTTTCAAAGAATGTTTTCTTTCCTTGCAGGTGTTTCACTGTCCGAGTACA
TTCGTCGCAGACGTCTTACTGTTGCAGCCTTTGAACTTAATAATAGTAATATAAGGATAATCGATTTAGCTGTTAAGTAT
GGATACAAGTCACCAGATTCTTTTACAAGAGCGTTTCAAAGTTTGCATGGGATAACACCATCAGAGGCTCGGTGCAACAG
TAAATCATTAAAATCCTATCCACGAATGACTTTTCAATTATCAATTAAAGGAGAAAATGAAATGAACTATAGAATTGAAG
AAAAAGAAGCATTTCGCATAATTGGCATTAAGAAAAGGGTACCTATAATTTTCAATGGAGTAAATCCAGAAATTGCTGCA
ATGTGGGAAAGTTTAACATTCGAAACTATTAATAAACTTAAAAAACTATCTAATATAGAGCCAATGGGACTAATAAGTGC
GTCTGTAAATTTTTCAGAAGGACGAATGGAGGAAAAAGGAGAACTTGACCATTATATAGGTGTAGCAACAACAAAGGAGT
GTCCAGATAACCTATCACAACTTGAAGTTTCTCCTACAAGATGGGCTGTATTTGAAGCTGTAGGTCCGTTTCCAGATACT
GTGCAAAATGTTTGGGGACGCATCTACTCTGAATGGTTTCCATCTTCAAACTATGAACAAACAAAAGGACCAGAAATCTT
ATGGAATGAGAATAAAGATGTAACTTCACCAAATTTTAAAAGCGAAATATGGATACCGGTTATAAAAAAGTAA

Upstream 100 bases:

>100_bases
ATACGTATGGTAATGAATTAATTCTACATAATTGTGCAAGAATAGTCGGATAGACAAATATAATTTCTGATATTCTATTG
ATGAGAGAGGAGGTCACAAA

Downstream 100 bases:

>100_bases
TAATAATATAAGAAACATTATTCTTATTTAGTGTAGCAATTGAAAAAACAAATAATTTATCTAAACACTGTATTATTCAA
AATTGAATTCTGCGGTGTTT

Product: transcription activator, effector binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MDSLKRMNDSINYIEENLDGEIDFKEVARLAFCSEYHFQRMFSFLAGVSLSEYIRRRRLTVAAFELNNSNIRIIDLAVKY
GYKSPDSFTRAFQSLHGITPSEARCNSKSLKSYPRMTFQLSIKGENEMNYRIEEKEAFRIIGIKKRVPIIFNGVNPEIAA
MWESLTFETINKLKKLSNIEPMGLISASVNFSEGRMEEKGELDHYIGVATTKECPDNLSQLEVSPTRWAVFEAVGPFPDT
VQNVWGRIYSEWFPSSNYEQTKGPEILWNENKDVTSPNFKSEIWIPVIKK

Sequences:

>Translated_290_residues
MDSLKRMNDSINYIEENLDGEIDFKEVARLAFCSEYHFQRMFSFLAGVSLSEYIRRRRLTVAAFELNNSNIRIIDLAVKY
GYKSPDSFTRAFQSLHGITPSEARCNSKSLKSYPRMTFQLSIKGENEMNYRIEEKEAFRIIGIKKRVPIIFNGVNPEIAA
MWESLTFETINKLKKLSNIEPMGLISASVNFSEGRMEEKGELDHYIGVATTKECPDNLSQLEVSPTRWAVFEAVGPFPDT
VQNVWGRIYSEWFPSSNYEQTKGPEILWNENKDVTSPNFKSEIWIPVIKK
>Mature_290_residues
MDSLKRMNDSINYIEENLDGEIDFKEVARLAFCSEYHFQRMFSFLAGVSLSEYIRRRRLTVAAFELNNSNIRIIDLAVKY
GYKSPDSFTRAFQSLHGITPSEARCNSKSLKSYPRMTFQLSIKGENEMNYRIEEKEAFRIIGIKKRVPIIFNGVNPEIAA
MWESLTFETINKLKKLSNIEPMGLISASVNFSEGRMEEKGELDHYIGVATTKECPDNLSQLEVSPTRWAVFEAVGPFPDT
VQNVWGRIYSEWFPSSNYEQTKGPEILWNENKDVTSPNFKSEIWIPVIKK

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=104, Percent_Identity=36.5384615384615, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081928, Length=95, Percent_Identity=35.7894736842105, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790857, Length=104, Percent_Identity=35.5769230769231, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33459; Mature: 33459

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSLKRMNDSINYIEENLDGEIDFKEVARLAFCSEYHFQRMFSFLAGVSLSEYIRRRRLT
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCEE
VAAFELNNSNIRIIDLAVKYGYKSPDSFTRAFQSLHGITPSEARCNSKSLKSYPRMTFQL
EEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCHHHHHHCCCEEEEE
SIKGENEMNYRIEEKEAFRIIGIKKRVPIIFNGVNPEIAAMWESLTFETINKLKKLSNIE
EEECCCCCCEEECCCCCEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCC
PMGLISASVNFSEGRMEEKGELDHYIGVATTKECPDNLSQLEVSPTRWAVFEAVGPFPDT
CCEEEEEECCCCCCCCCCCCCCCHHEECCCCCCCCCCHHHEECCCCCEEHHHHCCCCHHH
VQNVWGRIYSEWFPSSNYEQTKGPEILWNENKDVTSPNFKSEIWIPVIKK
HHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MDSLKRMNDSINYIEENLDGEIDFKEVARLAFCSEYHFQRMFSFLAGVSLSEYIRRRRLT
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCEE
VAAFELNNSNIRIIDLAVKYGYKSPDSFTRAFQSLHGITPSEARCNSKSLKSYPRMTFQL
EEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCHHHHHHCCCEEEEE
SIKGENEMNYRIEEKEAFRIIGIKKRVPIIFNGVNPEIAAMWESLTFETINKLKKLSNIE
EEECCCCCCEEECCCCCEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCC
PMGLISASVNFSEGRMEEKGELDHYIGVATTKECPDNLSQLEVSPTRWAVFEAVGPFPDT
CCEEEEEECCCCCCCCCCCCCCCHHEECCCCCCCCCCHHHEECCCCCEEHHHHCCCCHHH
VQNVWGRIYSEWFPSSNYEQTKGPEILWNENKDVTSPNFKSEIWIPVIKK
HHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]