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The map label for this gene is ydeM [C]

Identifier: 226947836

GI number: 226947836

Start: 742372

End: 743724

Strand: Direct

Name: ydeM [C]

Synonym: CLM_0691

Alternate gene names: 226947836

Gene position: 742372-743724 (Clockwise)

Preceding gene: 226947835

Following gene: 226947837

Centisome position: 17.87

GC content: 29.56

Gene sequence:

>1353_bases
ATGAAAAAATCTAAATACAATAAAATAATTAAACTAGAAGATGGAAAAACTATAGCTTTTAATAGTGTTACTTGTGCGCT
CGCAGAAGTAGATAAGGATTTTTTAGATGTATTAGAAAACATAGAAAATTTAGATATAGAAAATTTAGATGAAAAAAAGA
GAGAGTTAGTTGAAAACATGTCAGAGGGTAATTATATAGTTCATGATGATATGGATGAATTAAAGTTATTAAAATATAGA
AATTACAATGGAAAGTTTTCAAATGGCGCATTAGGATTAGTTATTGCTCCTACACTAGCTTGTAATTTTGCTTGTCCTTA
TTGTTATGAAACTCCAAAAGCAGGCCTTATGGATAAAAAAGTTCAAGATAGTTTAATAGAAATGATAGAAGAAAACGCTA
AAAATAAAAATAATATAAGTATAACCTGGTATGGTGGAGAACCCTTATTAGCAAAGGAGATGATATTTGACTTTTCTCAA
AGGGCTATAGAAATATGTGAAAGAGAAAATGTTAAATATAGTGCATATATTGTAACTAATGGATACTTGATAGATGAAGA
AACTATAGAAAATATGAAAAAAGCTAAAATATCAGGGGCGCAAATTACAGTGGATGGCCCTCCAAGTATTCATAATAAAA
GAAGAAAATTAAAGAATTCAGATGAGGAAACTTTTACTACAATAATGGCTAATGTAAAAAAGCTTATAGATGGTGGAATT
AAAAATATAGCCATTAGAATAAATGTAGATAAAACAAATGTTGATCATGTGGAGGAGTTATTAGATATATTAGAAGAAAA
TGGATTGAAAGATGTTGTTGTTAATCTAGGACATGTTACTGCATATACAGATAGTTGTAACGGAATTGCAAATAATTGTT
TAAATACAAAAGAATATGCAAAAAGTGATACTAAATATCAGAAAGTACTTTTTGAAAGAGGATATAAGGTGGCAGGAGCA
TATCCTTTCTATCCAAGCGTAAAAGCAAATTATTGTTGTGCTGATAATGTTGGAGCTTATGTAATTGATTCTGAAGGATA
TATGTATAAATGTTGGAATGATGTTGGAAATATTGATAGGGCGGTTGGAAATGTTACTACAATTAAAGACAAAGTAGATG
AAAAGATGTATGCAAGAAATATGGAATATATATTATGGTCTCCATTTGAATATGAAGAATGTAAGGAGTGTAGCATATTA
CCAATATGCATGGGGGGATGCCCATATAAAGGAACCATGAAGGAGAAGCCTGAATGTGAAAAATGGATATATAACCTTGA
AGAAACAATAATAGCAACATATAACCAAAAAAATGAGGCTGAATGTAGTCAGCATGGATGTTGCTGTGAATAA

Upstream 100 bases:

>100_bases
AATAACTAAATTATATAGAACAAATAACGCAATAATAAAATAAATTTAGATTATTATACATTAGATTATTAAAAATTTAA
CAAACCAGGGGGCAAAAATT

Downstream 100 bases:

>100_bases
TCTTAATTTTTATATTAAAGATTTAAGAGTATTAAGAGATATTGAAAGTTATTTGGATTTTTATAATAGAGCAATGAATA
TAAAAAATGTATTTAATTTT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Arylsulfatase Regulator; Radical SAM Family Protein; Transcriptional Regulator; Arylsulfatase Regulator Fe-S Oxidoreductase; AstB/ChuR-Related Protein; Radical Sam Domain Protein; Heme Biosynthesis Related Protein; Arylsulfatase Regulatory Protein; Radical Sam Family Protein; Radical SAM-Family Protein; Arylsulfatase-Activating AtsB; Heme Biosynthesis Family Protein; Transcriptional Regulatory Protein; Regulatory Protein; Metallo Cofactor Biosynthesis Protein; Radical SAM Superfamily Protein; Heme Biosynthesis; Fe-S Oxidoreductase; Radical SAM

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MKKSKYNKIIKLEDGKTIAFNSVTCALAEVDKDFLDVLENIENLDIENLDEKKRELVENMSEGNYIVHDDMDELKLLKYR
NYNGKFSNGALGLVIAPTLACNFACPYCYETPKAGLMDKKVQDSLIEMIEENAKNKNNISITWYGGEPLLAKEMIFDFSQ
RAIEICERENVKYSAYIVTNGYLIDEETIENMKKAKISGAQITVDGPPSIHNKRRKLKNSDEETFTTIMANVKKLIDGGI
KNIAIRINVDKTNVDHVEELLDILEENGLKDVVVNLGHVTAYTDSCNGIANNCLNTKEYAKSDTKYQKVLFERGYKVAGA
YPFYPSVKANYCCADNVGAYVIDSEGYMYKCWNDVGNIDRAVGNVTTIKDKVDEKMYARNMEYILWSPFEYEECKECSIL
PICMGGCPYKGTMKEKPECEKWIYNLEETIIATYNQKNEAECSQHGCCCE

Sequences:

>Translated_450_residues
MKKSKYNKIIKLEDGKTIAFNSVTCALAEVDKDFLDVLENIENLDIENLDEKKRELVENMSEGNYIVHDDMDELKLLKYR
NYNGKFSNGALGLVIAPTLACNFACPYCYETPKAGLMDKKVQDSLIEMIEENAKNKNNISITWYGGEPLLAKEMIFDFSQ
RAIEICERENVKYSAYIVTNGYLIDEETIENMKKAKISGAQITVDGPPSIHNKRRKLKNSDEETFTTIMANVKKLIDGGI
KNIAIRINVDKTNVDHVEELLDILEENGLKDVVVNLGHVTAYTDSCNGIANNCLNTKEYAKSDTKYQKVLFERGYKVAGA
YPFYPSVKANYCCADNVGAYVIDSEGYMYKCWNDVGNIDRAVGNVTTIKDKVDEKMYARNMEYILWSPFEYEECKECSIL
PICMGGCPYKGTMKEKPECEKWIYNLEETIIATYNQKNEAECSQHGCCCE
>Mature_450_residues
MKKSKYNKIIKLEDGKTIAFNSVTCALAEVDKDFLDVLENIENLDIENLDEKKRELVENMSEGNYIVHDDMDELKLLKYR
NYNGKFSNGALGLVIAPTLACNFACPYCYETPKAGLMDKKVQDSLIEMIEENAKNKNNISITWYGGEPLLAKEMIFDFSQ
RAIEICERENVKYSAYIVTNGYLIDEETIENMKKAKISGAQITVDGPPSIHNKRRKLKNSDEETFTTIMANVKKLIDGGI
KNIAIRINVDKTNVDHVEELLDILEENGLKDVVVNLGHVTAYTDSCNGIANNCLNTKEYAKSDTKYQKVLFERGYKVAGA
YPFYPSVKANYCCADNVGAYVIDSEGYMYKCWNDVGNIDRAVGNVTTIKDKVDEKMYARNMEYILWSPFEYEECKECSIL
PICMGGCPYKGTMKEKPECEKWIYNLEETIIATYNQKNEAECSQHGCCCE

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081923, Length=343, Percent_Identity=23.3236151603499, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51126; Mature: 51126

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSKYNKIIKLEDGKTIAFNSVTCALAEVDKDFLDVLENIENLDIENLDEKKRELVENM
CCCCCCCCEEEECCCCEEEECCHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
SEGNYIVHDDMDELKLLKYRNYNGKFSNGALGLVIAPTLACNFACPYCYETPKAGLMDKK
CCCCEEEECCHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHCCCCCCCCCCCCCCCCHHH
VQDSLIEMIEENAKNKNNISITWYGGEPLLAKEMIFDFSQRAIEICERENVKYSAYIVTN
HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
GYLIDEETIENMKKAKISGAQITVDGPPSIHNKRRKLKNSDEETFTTIMANVKKLIDGGI
CEEECHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
KNIAIRINVDKTNVDHVEELLDILEENGLKDVVVNLGHVTAYTDSCNGIANNCLNTKEYA
CEEEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCEEEECCCCCHHHHHCCCCHHHH
KSDTKYQKVLFERGYKVAGAYPFYPSVKANYCCADNVGAYVIDSEGYMYKCWNDVGNIDR
HCCHHHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCCEEEECCCCCEEEEHHHHCHHHH
AVGNVTTIKDKVDEKMYARNMEYILWSPFEYEECKECSILPICMGGCPYKGTMKEKPECE
HHCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCHH
KWIYNLEETIIATYNQKNEAECSQHGCCCE
HHHHHHHHHEEEECCCCCHHHHHHCCCCCC
>Mature Secondary Structure
MKKSKYNKIIKLEDGKTIAFNSVTCALAEVDKDFLDVLENIENLDIENLDEKKRELVENM
CCCCCCCCEEEECCCCEEEECCHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
SEGNYIVHDDMDELKLLKYRNYNGKFSNGALGLVIAPTLACNFACPYCYETPKAGLMDKK
CCCCEEEECCHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHCCCCCCCCCCCCCCCCHHH
VQDSLIEMIEENAKNKNNISITWYGGEPLLAKEMIFDFSQRAIEICERENVKYSAYIVTN
HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
GYLIDEETIENMKKAKISGAQITVDGPPSIHNKRRKLKNSDEETFTTIMANVKKLIDGGI
CEEECHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
KNIAIRINVDKTNVDHVEELLDILEENGLKDVVVNLGHVTAYTDSCNGIANNCLNTKEYA
CEEEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCEEEECCCCCHHHHHCCCCHHHH
KSDTKYQKVLFERGYKVAGAYPFYPSVKANYCCADNVGAYVIDSEGYMYKCWNDVGNIDR
HCCHHHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCCEEEECCCCCEEEEHHHHCHHHH
AVGNVTTIKDKVDEKMYARNMEYILWSPFEYEECKECSILPICMGGCPYKGTMKEKPECE
HHCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCHH
KWIYNLEETIIATYNQKNEAECSQHGCCCE
HHHHHHHHHEEEECCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA