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The map label for this gene is ypdB [H]

Identifier: 226947831

GI number: 226947831

Start: 739351

End: 740052

Strand: Direct

Name: ypdB [H]

Synonym: CLM_0686

Alternate gene names: 226947831

Gene position: 739351-740052 (Clockwise)

Preceding gene: 226947830

Following gene: 226947832

Centisome position: 17.79

GC content: 23.22

Gene sequence:

>702_bases
ATGCGCATAGGAATCTGTGGAAATGATGTTGAACAAAGAAACTATTTGAAAAATCATCTAATAAAAATTATTAAAGAAAC
GGAATTAGAATGTGAATTATTAGAATTTGATTGTGGGGAAGAGCTTCTACAAAATTATAAAAAGATGAACATTATATTTT
TAGATATAAATATGGGAAAAATAAATGGAATAGAAATAGCTAAAAAAATAAGAGAGTTTGATTCAGTAGTAGAAATAATA
TTTGTAACAAAGCTTGTCAATTATATTCATCAGGCATATGAAGTAAGAGCGTATAGGTATTTGCTGAGACCTATAAATTA
TGAAATTATAAAATATGTTACGTTGAACTGTATTAAGAGTATTGAAGCACAAAAGAATTTAGTTATTAAATATAAAGGCG
AAATTATAATTTTGAATATAGATGAAATTACATATATAGAGGTTATGCAAAAGATGTTAACTATACATACTAAAGAGAAA
GAATATATATTTAAAATGACCTTATCAAAATTTGAAAAAAAATTATCCCAACATGATTTCTTTAGATGCCACAAAAGTTT
TTTAGTTAATCTTAATAAAGTAAAAGAATTTAAGGACAACATAATCAATGTTAATGATACCTATATACCAATAAGTAAAT
ATAGGTCTAAAGAATTTAGACATAAATTAACAAAAATATTAAAAAATTCAATATGGCTTTAA

Upstream 100 bases:

>100_bases
ATTATTTTTATATTAAATACTGTCATCACCTTTTTTATTAGATTCTAGAATTTGCTTGCCCATGAATACTAAAAAACTAA
TAAAAGGGAGGACATTATAT

Downstream 100 bases:

>100_bases
AGAAAGAATCTATTTATTCTAGTACAGGTGTTATTCATGCCAATCATATTGAAAAAAGAATCAAAGGATAGTAGAATTTC
TTTAAAGTTAAATTAAAACA

Product: LytTr family DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MRIGICGNDVEQRNYLKNHLIKIIKETELECELLEFDCGEELLQNYKKMNIIFLDINMGKINGIEIAKKIREFDSVVEII
FVTKLVNYIHQAYEVRAYRYLLRPINYEIIKYVTLNCIKSIEAQKNLVIKYKGEIIILNIDEITYIEVMQKMLTIHTKEK
EYIFKMTLSKFEKKLSQHDFFRCHKSFLVNLNKVKEFKDNIINVNDTYIPISKYRSKEFRHKLTKILKNSIWL

Sequences:

>Translated_233_residues
MRIGICGNDVEQRNYLKNHLIKIIKETELECELLEFDCGEELLQNYKKMNIIFLDINMGKINGIEIAKKIREFDSVVEII
FVTKLVNYIHQAYEVRAYRYLLRPINYEIIKYVTLNCIKSIEAQKNLVIKYKGEIIILNIDEITYIEVMQKMLTIHTKEK
EYIFKMTLSKFEKKLSQHDFFRCHKSFLVNLNKVKEFKDNIINVNDTYIPISKYRSKEFRHKLTKILKNSIWL
>Mature_233_residues
MRIGICGNDVEQRNYLKNHLIKIIKETELECELLEFDCGEELLQNYKKMNIIFLDINMGKINGIEIAKKIREFDSVVEII
FVTKLVNYIHQAYEVRAYRYLLRPINYEIIKYVTLNCIKSIEAQKNLVIKYKGEIIILNIDEITYIEVMQKMLTIHTKEK
EYIFKMTLSKFEKKLSQHDFFRCHKSFLVNLNKVKEFKDNIINVNDTYIPISKYRSKEFRHKLTKILKNSIWL

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=212, Percent_Identity=29.7169811320755, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27973; Mature: 27973

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIGICGNDVEQRNYLKNHLIKIIKETELECELLEFDCGEELLQNYKKMNIIFLDINMGK
CEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCEEEEEEECCCC
INGIEIAKKIREFDSVVEIIFVTKLVNYIHQAYEVRAYRYLLRPINYEIIKYVTLNCIKS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IEAQKNLVIKYKGEIIILNIDEITYIEVMQKMLTIHTKEKEYIFKMTLSKFEKKLSQHDF
HHHCCCEEEEEECCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
FRCHKSFLVNLNKVKEFKDNIINVNDTYIPISKYRSKEFRHKLTKILKNSIWL
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRIGICGNDVEQRNYLKNHLIKIIKETELECELLEFDCGEELLQNYKKMNIIFLDINMGK
CEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCEEEEEEECCCC
INGIEIAKKIREFDSVVEIIFVTKLVNYIHQAYEVRAYRYLLRPINYEIIKYVTLNCIKS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
IEAQKNLVIKYKGEIIILNIDEITYIEVMQKMLTIHTKEKEYIFKMTLSKFEKKLSQHDF
HHHCCCEEEEEECCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
FRCHKSFLVNLNKVKEFKDNIINVNDTYIPISKYRSKEFRHKLTKILKNSIWL
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]