| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is ybfG [H]
Identifier: 226947822
GI number: 226947822
Start: 730318
End: 732405
Strand: Reverse
Name: ybfG [H]
Synonym: CLM_0674
Alternate gene names: 226947822
Gene position: 732405-730318 (Counterclockwise)
Preceding gene: 226947826
Following gene: 226947816
Centisome position: 17.63
GC content: 31.42
Gene sequence:
>2088_bases ATGGATCAAATGGTTTTAGAAACTCAAAAATGGTTAAACAAAACTTATCAAGGTAGAATGCCATCTTTAATAGAGGATGG TATAACAGGATGGAGTACAATACAAGCATTAACTAGAGCACTCCAACTAGAGCTAGGCATTACATCTGATGGACTATGGG GGCCAAGTACAGAAGAAAAGTGTCCTACAATAAGCTCAAATAGTGGTAATAAAAATATAATTACTATTCTACAATGTGGC TTATTCTGTAAAGGATATGATGGTGGTGGTATAGATGGAAATTTTACAACAAGAACATCTGCAGGTATTTCTAATTTAAA AAAGGATGCAGGACTTTCTGACACTAATGGAAATGCTACACCACTAATATTTAAAGTATTATTATCAACTATGGATGGAT TTGTATTAGCTATTAGTGGAGATCCTAACGTACGTAAAATACAACAAAATCTTAATAGAGATTATTATAAAACTATTGGT TTAATTCCTTGCAATGGAGTATATTCTAGAGATACTAATAGAGCTTTAATAAAAGCTTTGCAAGTTGAAGAAGGCACTAC CCCTGATGGAATATGGGGACCAGGTACACAAGATAAATGTCCTACAATACCAGGAAGTAACTCAAATCAAAGATATGTAT TACTACTTCAATATTCTTTATATGTTAATGGAATAGACCCTAATGGTTTTGATGGACTATTTGGAAATGGATTATCTAAC GCAATAAAAGAATTTCAAAGCTTTTGTGCATTACCTGCTGATGGATATGCTGGAAAACAGGTTTGGGCTTCACTTCTTGT TAGTACTGGTGATAGTAATAGAAAAGGTACTGTTTGCGACTGTAGTACTACATTAACTCCAGAAAAAATACAAACTTTAA AAAATTCGGGTTATGAAGCTGTAGGAAGATATCTTACTGGTAAATTTAAACTTACACCAAACGAAATTAAATTAATAACT TCCCAAGGGGTAAAAATTGTAGCTATATTAGAGGAATTGGGCTATGAATTATCTCACTTCAATTATACAAATGGATATCA AGATGGTATAGATGCATTCAATGCTTCAAAATTTTTAGGATTTCCAAAAGACACAATTATATACTTTGCAGTAGATTGCG ACGTTATGGACTACCAAGTAACGGATCAAATATTACCTTATTTCCAAGGAGTTAATGCTGCTTTTAATTATATTGGAAGT GACTATAAAATAGGTATATACGCTCCTAGAAATGTGTGTAGTAGAGCTGCAAATGCAGGTTATACATGCAGTAGTTTTGT GTGTGATATGTCAACAGGCTTTAGTGGTAATCTTGGATACCCATTACCTAAAGACTGGACTTTTGATCAAATAAAAACTG TTACCATAGGAAATGGTTCTGGAGCTATCGAAATAGATAATAATATTGCCAGAGGTAATTATTACGGAGAAAATAATATT AATCCTACATTTGAAAATATATTTGAACTTATAAATGATACAAGTATATGTGAATTATTAGGAATAGAATTTACAGCCTT TGCTCAGAAGAAAACAATATTTAATTCTCCTTTAATAAAAGTTGAGGGTGAAATGTCTTTTGGATATAAAAAAGGTGATG GTTTTTCAACTTTAAATATAAAGCCTGACGGTACCTTAGAAGGCATAGGCATTGAAGCTGGATTATCAGCAATAGAATCA TTTATTGGAGAAGAAAAAACTGTAGCTTTAAAATCTTCACTAGAAGAATTAAGTGTGAAAACAGGAACAATAGAGTTAGC TTATAGTATTTCAGCAAATCCAGAAGGATTTGAATGTGAAGTAGAAATTCCTATAGAATTATATTTAGACAGTGATCATA ATAATTCTATCACAGTAACTCTTTCTCTTAAAATTATAATAAAAAACGATAGCACTAAAGATTATTTAGATGAAACAATA TCAAATATTAAATCTTTTGCTAATCAATATGGAGGCTTAACATTTTTAGCCATTATCGTTTTAGGAGTTACACTAACTGC TGTAGAAGTTGGAATTGCTGCTACTGGTACCATTCTAGCAGGATTATTAATAGCAATTATAGAAGTATTCCCAAATATAA AAAGTTAA
Upstream 100 bases:
>100_bases TAAAAAATATCTATGTATATAATTATTTTTTAATATTTATGTTTACAAACTTATCTTTGATTCCTATTTATAGAGTGAAA AAAGAAAAGGAGAGATTAAA
Downstream 100 bases:
>100_bases TTTTTATTAATTAACCTAAAAAATAATATCTTTCCTATAAAATGAATAGGAAAGATATTATTTTTTATATAAATTCTATA TCTTTAGGGTAAGAATACTG
Product: YbfG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 695; Mature: 695
Protein sequence:
>695_residues MDQMVLETQKWLNKTYQGRMPSLIEDGITGWSTIQALTRALQLELGITSDGLWGPSTEEKCPTISSNSGNKNIITILQCG LFCKGYDGGGIDGNFTTRTSAGISNLKKDAGLSDTNGNATPLIFKVLLSTMDGFVLAISGDPNVRKIQQNLNRDYYKTIG LIPCNGVYSRDTNRALIKALQVEEGTTPDGIWGPGTQDKCPTIPGSNSNQRYVLLLQYSLYVNGIDPNGFDGLFGNGLSN AIKEFQSFCALPADGYAGKQVWASLLVSTGDSNRKGTVCDCSTTLTPEKIQTLKNSGYEAVGRYLTGKFKLTPNEIKLIT SQGVKIVAILEELGYELSHFNYTNGYQDGIDAFNASKFLGFPKDTIIYFAVDCDVMDYQVTDQILPYFQGVNAAFNYIGS DYKIGIYAPRNVCSRAANAGYTCSSFVCDMSTGFSGNLGYPLPKDWTFDQIKTVTIGNGSGAIEIDNNIARGNYYGENNI NPTFENIFELINDTSICELLGIEFTAFAQKKTIFNSPLIKVEGEMSFGYKKGDGFSTLNIKPDGTLEGIGIEAGLSAIES FIGEEKTVALKSSLEELSVKTGTIELAYSISANPEGFECEVEIPIELYLDSDHNNSITVTLSLKIIIKNDSTKDYLDETI SNIKSFANQYGGLTFLAIIVLGVTLTAVEVGIAATGTILAGLLIAIIEVFPNIKS
Sequences:
>Translated_695_residues MDQMVLETQKWLNKTYQGRMPSLIEDGITGWSTIQALTRALQLELGITSDGLWGPSTEEKCPTISSNSGNKNIITILQCG LFCKGYDGGGIDGNFTTRTSAGISNLKKDAGLSDTNGNATPLIFKVLLSTMDGFVLAISGDPNVRKIQQNLNRDYYKTIG LIPCNGVYSRDTNRALIKALQVEEGTTPDGIWGPGTQDKCPTIPGSNSNQRYVLLLQYSLYVNGIDPNGFDGLFGNGLSN AIKEFQSFCALPADGYAGKQVWASLLVSTGDSNRKGTVCDCSTTLTPEKIQTLKNSGYEAVGRYLTGKFKLTPNEIKLIT SQGVKIVAILEELGYELSHFNYTNGYQDGIDAFNASKFLGFPKDTIIYFAVDCDVMDYQVTDQILPYFQGVNAAFNYIGS DYKIGIYAPRNVCSRAANAGYTCSSFVCDMSTGFSGNLGYPLPKDWTFDQIKTVTIGNGSGAIEIDNNIARGNYYGENNI NPTFENIFELINDTSICELLGIEFTAFAQKKTIFNSPLIKVEGEMSFGYKKGDGFSTLNIKPDGTLEGIGIEAGLSAIES FIGEEKTVALKSSLEELSVKTGTIELAYSISANPEGFECEVEIPIELYLDSDHNNSITVTLSLKIIIKNDSTKDYLDETI SNIKSFANQYGGLTFLAIIVLGVTLTAVEVGIAATGTILAGLLIAIIEVFPNIKS >Mature_695_residues MDQMVLETQKWLNKTYQGRMPSLIEDGITGWSTIQALTRALQLELGITSDGLWGPSTEEKCPTISSNSGNKNIITILQCG LFCKGYDGGGIDGNFTTRTSAGISNLKKDAGLSDTNGNATPLIFKVLLSTMDGFVLAISGDPNVRKIQQNLNRDYYKTIG LIPCNGVYSRDTNRALIKALQVEEGTTPDGIWGPGTQDKCPTIPGSNSNQRYVLLLQYSLYVNGIDPNGFDGLFGNGLSN AIKEFQSFCALPADGYAGKQVWASLLVSTGDSNRKGTVCDCSTTLTPEKIQTLKNSGYEAVGRYLTGKFKLTPNEIKLIT SQGVKIVAILEELGYELSHFNYTNGYQDGIDAFNASKFLGFPKDTIIYFAVDCDVMDYQVTDQILPYFQGVNAAFNYIGS DYKIGIYAPRNVCSRAANAGYTCSSFVCDMSTGFSGNLGYPLPKDWTFDQIKTVTIGNGSGAIEIDNNIARGNYYGENNI NPTFENIFELINDTSICELLGIEFTAFAQKKTIFNSPLIKVEGEMSFGYKKGDGFSTLNIKPDGTLEGIGIEAGLSAIES FIGEEKTVALKSSLEELSVKTGTIELAYSISANPEGFECEVEIPIELYLDSDHNNSITVTLSLKIIIKNDSTKDYLDETI SNIKSFANQYGGLTFLAIIVLGVTLTAVEVGIAATGTILAGLLIAIIEVFPNIKS
Specific function: Unknown
COG id: COG3409
COG function: function code M; Putative peptidoglycan-binding domain-containing protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fadG family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015020 - InterPro: IPR017853 - InterPro: IPR002477 [H]
Pfam domain/function: PF08924 DUF1906; PF01471 PG_binding_1 [H]
EC number: NA
Molecular weight: Translated: 75307; Mature: 75307
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDQMVLETQKWLNKTYQGRMPSLIEDGITGWSTIQALTRALQLELGITSDGLWGPSTEEK CCCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCC CPTISSNSGNKNIITILQCGLFCKGYDGGGIDGNFTTRTSAGISNLKKDAGLSDTNGNAT CCCCCCCCCCCCEEEEEEECCEEECCCCCCCCCCCEECCHHHHHHHHHHCCCCCCCCCCC PLIFKVLLSTMDGFVLAISGDPNVRKIQQNLNRDYYKTIGLIPCNGVYSRDTNRALIKAL HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCHHHHCCCEECCCCCCCCCCHHHHHHH QVEEGTTPDGIWGPGTQDKCPTIPGSNSNQRYVLLLQYSLYVNGIDPNGFDGLFGNGLSN HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCHHH AIKEFQSFCALPADGYAGKQVWASLLVSTGDSNRKGTVCDCSTTLTPEKIQTLKNSGYEA HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHCCCHHH VGRYLTGKFKLTPNEIKLITSQGVKIVAILEELGYELSHFNYTNGYQDGIDAFNASKFLG HHHHHEEEEEECCCCEEEEECCCCEEEEEHHHHCCHHHCCCCCCCCHHHHHHCCCHHHCC FPKDTIIYFAVDCDVMDYQVTDQILPYFQGVNAAFNYIGSDYKIGIYAPRNVCSRAANAG CCCCEEEEEEEECCEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCC YTCSSFVCDMSTGFSGNLGYPLPKDWTFDQIKTVTIGNGSGAIEIDNNIARGNYYGENNI CCHHHEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCEECCCCCCCCCC NPTFENIFELINDTSICELLGIEFTAFAQKKTIFNSPLIKVEGEMSFGYKKGDGFSTLNI CHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEECCEECCEECCCCEEEEEE KPDGTLEGIGIEAGLSAIESFIGEEKTVALKSSLEELSVKTGTIELAYSISANPEGFECE CCCCCEECCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHEECCEEEEEEEECCCCCCEEEE VEIPIELYLDSDHNNSITVTLSLKIIIKNDSTKDYLDETISNIKSFANQYGGLTFLAIIV EEEEEEEEEECCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH LGVTLTAVEVGIAATGTILAGLLIAIIEVFPNIKS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MDQMVLETQKWLNKTYQGRMPSLIEDGITGWSTIQALTRALQLELGITSDGLWGPSTEEK CCCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCC CPTISSNSGNKNIITILQCGLFCKGYDGGGIDGNFTTRTSAGISNLKKDAGLSDTNGNAT CCCCCCCCCCCCEEEEEEECCEEECCCCCCCCCCCEECCHHHHHHHHHHCCCCCCCCCCC PLIFKVLLSTMDGFVLAISGDPNVRKIQQNLNRDYYKTIGLIPCNGVYSRDTNRALIKAL HHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCHHHHCCCEECCCCCCCCCCHHHHHHH QVEEGTTPDGIWGPGTQDKCPTIPGSNSNQRYVLLLQYSLYVNGIDPNGFDGLFGNGLSN HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCHHH AIKEFQSFCALPADGYAGKQVWASLLVSTGDSNRKGTVCDCSTTLTPEKIQTLKNSGYEA HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHCCCHHH VGRYLTGKFKLTPNEIKLITSQGVKIVAILEELGYELSHFNYTNGYQDGIDAFNASKFLG HHHHHEEEEEECCCCEEEEECCCCEEEEEHHHHCCHHHCCCCCCCCHHHHHHCCCHHHCC FPKDTIIYFAVDCDVMDYQVTDQILPYFQGVNAAFNYIGSDYKIGIYAPRNVCSRAANAG CCCCEEEEEEEECCEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCC YTCSSFVCDMSTGFSGNLGYPLPKDWTFDQIKTVTIGNGSGAIEIDNNIARGNYYGENNI CCHHHEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCEECCCCCCCCCC NPTFENIFELINDTSICELLGIEFTAFAQKKTIFNSPLIKVEGEMSFGYKKGDGFSTLNI CHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEECCEECCEECCCCEEEEEE KPDGTLEGIGIEAGLSAIESFIGEEKTVALKSSLEELSVKTGTIELAYSISANPEGFECE CCCCCEECCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHEECCEEEEEEEECCCCCCEEEE VEIPIELYLDSDHNNSITVTLSLKIIIKNDSTKDYLDETISNIKSFANQYGGLTFLAIIV EEEEEEEEEECCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH LGVTLTAVEVGIAATGTILAGLLIAIIEVFPNIKS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]