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The map label for this gene is rhaS [H]

Identifier: 226947816

GI number: 226947816

Start: 725337

End: 726206

Strand: Reverse

Name: rhaS [H]

Synonym: CLM_0668

Alternate gene names: 226947816

Gene position: 726206-725337 (Counterclockwise)

Preceding gene: 226947822

Following gene: 226947808

Centisome position: 17.48

GC content: 24.37

Gene sequence:

>870_bases
ATGAACATAAAAAACTCTTCATCAAACATAAAAAGAGGATATTTAAAAGAAGATTTTAGATTCTTTCATCTAAAAGATAA
AAAAGATATGGAATTTGAGCTTCATTATCATGACTTTAACAAAATAATTGTTTTCATGTCTGGTAATGTTAGTTATCTAA
TAGAAGGAAAAGCTTATAAACTGAAACCCTGGGATATACTTTTTGTAAGCAGTAATGATCTACATAAAGTTATAATAAAC
AATGATGAACCTTATGAAAGGATAATAATATGGGTTAATTCAAAGTTTTTAGAAATGCACAATAAAAATAATAACAACTT
GCTTACTTGCTTTCAATTATCTTCTAAGCATAAAATTAATCTTTTCCGTATGGAAGAACATAATATATCCTTAATAAAAC
ATACTTTATTTTCTCTCGAATCTGCTACAAGAGATAAGGAATTTGGCAATATTGTATTAAAAAATTCTTTATTTATTCAG
TTAATGGTATATCTAAATAGATTATTTATGAACGGTAATAACCATATAGGCAAAAAAGATATAGAATATGATAAACAAAT
AGAAGAAATTATAAATTATATAAAGGAAAACCTTCAAGAGGACCTGTCTATAGATACTCTATCCTCTAAATTTTTTATAA
ATAAATATTATCTTATGCACAAATTTAAATCTCAAACTGGTTATACTCTTCATAAATATATACAACAAAAACGTTTAGCT
TTTTCTAAGTCTCTTATAATAAAAGGACATAAGATTACAGAAATATATTTAAAATGTGGATTTGGAGACTATTCAAACTT
TATACGTGCGTTTAAAAAAGCCTATGGTATATCCCCTAAGGATTACTATAAAAACTTTAAGAATTATTAA

Upstream 100 bases:

>100_bases
TCGTTATCCAGAGACGTAACCGCTCTTTACTCCCACTTTGAAGAAGATGGGAGTATTAGAGCGGGTAGTCATCGGATAAA
TTTTTAAGGAAGGGATAGTA

Downstream 100 bases:

>100_bases
TCAGAATTCTTACTTTTGAAATATTAAAACTAAAAATATAGTCTAACAAGAAATAATATCCTTAAAAAAGCAATTATTTT
TCCTTAATCTTTCCTGTATG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MNIKNSSSNIKRGYLKEDFRFFHLKDKKDMEFELHYHDFNKIIVFMSGNVSYLIEGKAYKLKPWDILFVSSNDLHKVIIN
NDEPYERIIIWVNSKFLEMHNKNNNNLLTCFQLSSKHKINLFRMEEHNISLIKHTLFSLESATRDKEFGNIVLKNSLFIQ
LMVYLNRLFMNGNNHIGKKDIEYDKQIEEIINYIKENLQEDLSIDTLSSKFFINKYYLMHKFKSQTGYTLHKYIQQKRLA
FSKSLIIKGHKITEIYLKCGFGDYSNFIRAFKKAYGISPKDYYKNFKNY

Sequences:

>Translated_289_residues
MNIKNSSSNIKRGYLKEDFRFFHLKDKKDMEFELHYHDFNKIIVFMSGNVSYLIEGKAYKLKPWDILFVSSNDLHKVIIN
NDEPYERIIIWVNSKFLEMHNKNNNNLLTCFQLSSKHKINLFRMEEHNISLIKHTLFSLESATRDKEFGNIVLKNSLFIQ
LMVYLNRLFMNGNNHIGKKDIEYDKQIEEIINYIKENLQEDLSIDTLSSKFFINKYYLMHKFKSQTGYTLHKYIQQKRLA
FSKSLIIKGHKITEIYLKCGFGDYSNFIRAFKKAYGISPKDYYKNFKNY
>Mature_289_residues
MNIKNSSSNIKRGYLKEDFRFFHLKDKKDMEFELHYHDFNKIIVFMSGNVSYLIEGKAYKLKPWDILFVSSNDLHKVIIN
NDEPYERIIIWVNSKFLEMHNKNNNNLLTCFQLSSKHKINLFRMEEHNISLIKHTLFSLESATRDKEFGNIVLKNSLFIQ
LMVYLNRLFMNGNNHIGKKDIEYDKQIEEIINYIKENLQEDLSIDTLSSKFFINKYYLMHKFKSQTGYTLHKYIQQKRLA
FSKSLIIKGHKITEIYLKCGFGDYSNFIRAFKKAYGISPKDYYKNFKNY

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=254, Percent_Identity=19.2913385826772, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34626; Mature: 34626

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKNSSSNIKRGYLKEDFRFFHLKDKKDMEFELHYHDFNKIIVFMSGNVSYLIEGKAYK
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCEEEEEEECCEEEEEECCEEE
LKPWDILFVSSNDLHKVIINNDEPYERIIIWVNSKFLEMHNKNNNNLLTCFQLSSKHKIN
ECCEEEEEECCCCEEEEEECCCCCCEEEEEEECCEEEEECCCCCCCEEEEEEECCCCEEE
LFRMEEHNISLIKHTLFSLESATRDKEFGNIVLKNSLFIQLMVYLNRLFMNGNNHIGKKD
EEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCC
IEYDKQIEEIINYIKENLQEDLSIDTLSSKFFINKYYLMHKFKSQTGYTLHKYIQQKRLA
CHHHHHHHHHHHHHHHHHHHHCCEEHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FSKSLIIKGHKITEIYLKCGFGDYSNFIRAFKKAYGISPKDYYKNFKNY
HHHHEEEECCEEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MNIKNSSSNIKRGYLKEDFRFFHLKDKKDMEFELHYHDFNKIIVFMSGNVSYLIEGKAYK
CCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCEEEEEEECCEEEEEECCEEE
LKPWDILFVSSNDLHKVIINNDEPYERIIIWVNSKFLEMHNKNNNNLLTCFQLSSKHKIN
ECCEEEEEECCCCEEEEEECCCCCCEEEEEEECCEEEEECCCCCCCEEEEEEECCCCEEE
LFRMEEHNISLIKHTLFSLESATRDKEFGNIVLKNSLFIQLMVYLNRLFMNGNNHIGKKD
EEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCC
IEYDKQIEEIINYIKENLQEDLSIDTLSSKFFINKYYLMHKFKSQTGYTLHKYIQQKRLA
CHHHHHHHHHHHHHHHHHHHHCCEEHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FSKSLIIKGHKITEIYLKCGFGDYSNFIRAFKKAYGISPKDYYKNFKNY
HHHHEEEECCEEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA