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The map label for this gene is ybbK [C]

Identifier: 226947791

GI number: 226947791

Start: 696574

End: 697512

Strand: Direct

Name: ybbK [C]

Synonym: CLM_0641

Alternate gene names: 226947791

Gene position: 696574-697512 (Clockwise)

Preceding gene: 226947790

Following gene: 226947792

Centisome position: 16.76

GC content: 28.86

Gene sequence:

>939_bases
ATGGCGATACTTACAATTGTATTATTAGTTATTATATTAGTAACATTTTTAATGTCTATAAAAGTTGTAAATACAGGTTA
TGTCTCTATTGTAGAAAGGTTTGGTAAATATCATAGAACTTTAGAGCCAGGTTGGCATATAATTATGCCTTTTGCCGATT
TTGTAAGAAAAAAAATTTCTACAAAGCAACAAATAATAGATATAGATCCACAGAGTGTTATTACACAAGATAATGTAAAA
ATATCTATAGATAATGTTATATTTTACAAAATAATGAATTCTAAAGATGCAGTTTACAATATTGAAGACTATAAAGCAGG
TATAACATATTCTACTATAACAAATATGAGAAATATAGTAGGTAATATGACTTTAGATGAAGTTTTATCAGGAAGAGATA
AAATAAATTCAAAATTACTTGAACAAATAGATGAAATTACAGATGCCTATGGTATTAAAATTTTATCTGTAGAAATAAAA
AATATAGACCCACCAAGAGAAATACAAGAAGCTATGGAAAAACAAATGAGAGCAGAAAGAGATAAGAGAGCTGCTATACT
TCAAGCAGAAGGGGAAAAACAATCAGAAATAGCAAGAGCAGAAGGTGAAAAGCAAGCTAAAATATTACAATCAGAGGCAG
AGAAGGAAGCTAATATAAGAAGAGCGGAAGGTCTAAGAGAATCTCAATTATTAGAAGCGGAAGGTAAAGCTAGAGCTATA
GAACAAATAGCTAATGCAGAATCAGAAGCTATAAGAAAGGTTAATGCGTCTATAATAGAATCAGGCACAAATGAAGTAGT
TATTGCTTTAAAACAAGTAGATGCGCTAAAAGAAATGGCTAAAAATCCAGCTAATAAGTTAATATTACCAAATGAAACAT
TATCTTCATTAGGTAGTATTGCTGCTATAGGTGATTTGCTAAATAAAGATAATAAATAA

Upstream 100 bases:

>100_bases
TTACAAATAGTGGCAATCATATAAAAAAGGGAGACAAGGTAAAGATAAATTCAGTAAAAGGTAACAAAATTTTTGTTAAA
AAGGTAGAGGAGGAATAAGC

Downstream 100 bases:

>100_bases
AGATAATAAATAAAGAAGATCCATAGATTTGATTTACACAAATCTATGGATGTTTTTTTATCTAACAATTATGAGATAAA
ATTAGAGGAAATATTATGGG

Product: SPFH domain/Band 7 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MAILTIVLLVIILVTFLMSIKVVNTGYVSIVERFGKYHRTLEPGWHIIMPFADFVRKKISTKQQIIDIDPQSVITQDNVK
ISIDNVIFYKIMNSKDAVYNIEDYKAGITYSTITNMRNIVGNMTLDEVLSGRDKINSKLLEQIDEITDAYGIKILSVEIK
NIDPPREIQEAMEKQMRAERDKRAAILQAEGEKQSEIARAEGEKQAKILQSEAEKEANIRRAEGLRESQLLEAEGKARAI
EQIANAESEAIRKVNASIIESGTNEVVIALKQVDALKEMAKNPANKLILPNETLSSLGSIAAIGDLLNKDNK

Sequences:

>Translated_312_residues
MAILTIVLLVIILVTFLMSIKVVNTGYVSIVERFGKYHRTLEPGWHIIMPFADFVRKKISTKQQIIDIDPQSVITQDNVK
ISIDNVIFYKIMNSKDAVYNIEDYKAGITYSTITNMRNIVGNMTLDEVLSGRDKINSKLLEQIDEITDAYGIKILSVEIK
NIDPPREIQEAMEKQMRAERDKRAAILQAEGEKQSEIARAEGEKQAKILQSEAEKEANIRRAEGLRESQLLEAEGKARAI
EQIANAESEAIRKVNASIIESGTNEVVIALKQVDALKEMAKNPANKLILPNETLSSLGSIAAIGDLLNKDNK
>Mature_311_residues
AILTIVLLVIILVTFLMSIKVVNTGYVSIVERFGKYHRTLEPGWHIIMPFADFVRKKISTKQQIIDIDPQSVITQDNVKI
SIDNVIFYKIMNSKDAVYNIEDYKAGITYSTITNMRNIVGNMTLDEVLSGRDKINSKLLEQIDEITDAYGIKILSVEIKN
IDPPREIQEAMEKQMRAERDKRAAILQAEGEKQSEIARAEGEKQAKILQSEAEKEANIRRAEGLRESQLLEAEGKARAIE
QIANAESEAIRKVNASIIESGTNEVVIALKQVDALKEMAKNPANKLILPNETLSSLGSIAAIGDLLNKDNK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=262, Percent_Identity=38.1679389312977, Blast_Score=172, Evalue=5e-43,
Organism=Homo sapiens, GI38016911, Length=221, Percent_Identity=33.4841628959276, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI221316744, Length=222, Percent_Identity=29.2792792792793, Blast_Score=101, Evalue=8e-22,
Organism=Homo sapiens, GI21686995, Length=222, Percent_Identity=29.2792792792793, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI7657615, Length=187, Percent_Identity=24.5989304812834, Blast_Score=71, Evalue=1e-12,
Organism=Escherichia coli, GI1786697, Length=314, Percent_Identity=39.8089171974522, Blast_Score=229, Evalue=1e-61,
Organism=Escherichia coli, GI1790617, Length=324, Percent_Identity=24.3827160493827, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790616, Length=200, Percent_Identity=25.5, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI32564147, Length=276, Percent_Identity=35.5072463768116, Blast_Score=159, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17569499, Length=206, Percent_Identity=33.9805825242718, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17569493, Length=229, Percent_Identity=29.2576419213974, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI25153583, Length=236, Percent_Identity=30.9322033898305, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI193209764, Length=222, Percent_Identity=27.9279279279279, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI71987612, Length=236, Percent_Identity=30.9322033898305, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17570459, Length=205, Percent_Identity=32.1951219512195, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71987621, Length=236, Percent_Identity=30.9322033898305, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI32566490, Length=215, Percent_Identity=29.7674418604651, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI71989955, Length=183, Percent_Identity=32.2404371584699, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71989948, Length=181, Percent_Identity=32.5966850828729, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17569497, Length=193, Percent_Identity=25.9067357512953, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193210507, Length=200, Percent_Identity=31, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17570161, Length=200, Percent_Identity=31, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71989963, Length=125, Percent_Identity=28.8, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI45550506, Length=274, Percent_Identity=36.8613138686131, Blast_Score=173, Evalue=1e-43,
Organism=Drosophila melanogaster, GI24657857, Length=209, Percent_Identity=33.0143540669856, Blast_Score=100, Evalue=9e-22,
Organism=Drosophila melanogaster, GI281365664, Length=237, Percent_Identity=32.0675105485232, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI62484448, Length=209, Percent_Identity=33.0143540669856, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI62484274, Length=209, Percent_Identity=33.0143540669856, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21356845, Length=203, Percent_Identity=25.1231527093596, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI45556022, Length=206, Percent_Identity=30.0970873786408, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI281361631, Length=195, Percent_Identity=28.2051282051282, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI281361633, Length=195, Percent_Identity=28.2051282051282, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI18860517, Length=205, Percent_Identity=31.219512195122, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI28573263, Length=205, Percent_Identity=24.8780487804878, Blast_Score=81, Evalue=9e-16,
Organism=Drosophila melanogaster, GI281361635, Length=131, Percent_Identity=28.2442748091603, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 34879; Mature: 34748

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAILTIVLLVIILVTFLMSIKVVNTGYVSIVERFGKYHRTLEPGWHIIMPFADFVRKKIS
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHC
TKQQIIDIDPQSVITQDNVKISIDNVIFYKIMNSKDAVYNIEDYKAGITYSTITNMRNIV
CHHHEEECCCHHHEECCCCEEEECCEEEEEEECCCCCEEEHHHHHCCCHHHHHHHHHHHH
GNMTLDEVLSGRDKINSKLLEQIDEITDAYGIKILSVEIKNIDPPREIQEAMEKQMRAER
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
DKRAAILQAEGEKQSEIARAEGEKQAKILQSEAEKEANIRRAEGLRESQLLEAEGKARAI
HHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHH
EQIANAESEAIRKVNASIIESGTNEVVIALKQVDALKEMAKNPANKLILPNETLSSLGSI
HHHHCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHH
AAIGDLLNKDNK
HHHHHHHCCCCC
>Mature Secondary Structure 
AILTIVLLVIILVTFLMSIKVVNTGYVSIVERFGKYHRTLEPGWHIIMPFADFVRKKIS
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHC
TKQQIIDIDPQSVITQDNVKISIDNVIFYKIMNSKDAVYNIEDYKAGITYSTITNMRNIV
CHHHEEECCCHHHEECCCCEEEECCEEEEEEECCCCCEEEHHHHHCCCHHHHHHHHHHHH
GNMTLDEVLSGRDKINSKLLEQIDEITDAYGIKILSVEIKNIDPPREIQEAMEKQMRAER
CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
DKRAAILQAEGEKQSEIARAEGEKQAKILQSEAEKEANIRRAEGLRESQLLEAEGKARAI
HHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHH
EQIANAESEAIRKVNASIIESGTNEVVIALKQVDALKEMAKNPANKLILPNETLSSLGSI
HHHHCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHH
AAIGDLLNKDNK
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]