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The map label for this gene is yrvJ [H]

Identifier: 226947747

GI number: 226947747

Start: 641363

End: 643687

Strand: Reverse

Name: yrvJ [H]

Synonym: CLM_0596

Alternate gene names: 226947747

Gene position: 643687-641363 (Counterclockwise)

Preceding gene: 226947755

Following gene: 226947744

Centisome position: 15.49

GC content: 33.16

Gene sequence:

>2325_bases
TTGAATAAATCAAGAAAGGCTTTTGCTACTTGTGCCGTATCCGCTGCCCTATTAGGCCAAAATTTTTTATTTTCCCAAAA
TGTTCTAGCCGTTAGTGATAGCATGTACCCTAATGTTAATAGTAATGCTTATAATTCTAACAATATATTTACTCAATGCG
GATTCAAAGGACAATGTACTTGGTTTACCTATGGAAGAGTTTTAGAAAAATTAAACATGAAACTTCCAAGTCAATTTTAT
GGTAATGCTATAGATTGGTGGTATTCTAACATTAAATCCAATACATTCTCCTATGGTTCAGAGCCTCAAGCTAATTCTAT
AGTAGTTTGGAGTGGAGGCTCAAAAGGATATGGACATGTTGGTTTTGTAGAAAAAGTTGTAGGAGATACTATTTATTACA
ATGAAGGAAATGTTGAAAAAAGAGGCTATTATGATGGTTATGTAAAAACCATATCTAAACAAGCCATAAAAAATAGAGGT
AACTTATTTTTAAAGGGATATATCTATTTAAATGGTAGTTCAAATAGCTCTAATAGTAATAATGACTATACTATAATAAA
AACATCTAAGGTTTCTTGTTCAAGCCTTAATGTCAGAAGCAATCCTTCTCTATCATCAGCGGTTATAGGTGGTGTTTCGA
AAAATCAAACCCTTTCTGTTATCAGTGAAAGTAATGGATGGTCAAAAATAAAATATGGTTCCGGAGTTGGTTATGTAAGT
TCTAAATATCTATATGATGAAAATAATACTATCAATTCTGGTAATGGTGGTTCTTCTAGTAATGAAAGTGTACAACCAGG
TTTTGTTAAACTATCTAATAGTAGTTCAGTATTAAATGTTAGAAGTTCAGCTAATTTATCCTCTAATATAATAGGTTCTC
TTAAACATGGATCATCTGTATCAATATTAGGTAAAACCGGTTCTTGGTATAAAATTAAATATGGTTCTAAAACTGCCTAT
GTAAGTTCAAGTTATATTTCATCAAGCAACGATTCTAACTCTAGTTCTAATACTAGTTCTAGTACCTCAACTAGTAAAGG
CACTGTAAAATTATCTAGTACAAGCTCTTCATTAAACCTTAGAGAGAATCCAAGTCTATCCTCTAAAGTATTAGGTGGAC
TTTCACATGGTTCTTCTGTTGATATACTAGATAAAGCTGGTTCTTGGTATAAAGTTAAATATGGTTCTAAAATTGGTTAT
GTCAGCAGCCAATTTATAACTACTTCCAACTCTTCAAATAATAACGGATCTTCCGTAACAGACAAAAGATTTGGAACTGT
ATATCTATCCGACAAATATTCTACTTTAAATGTACGAAAAAATGCTGGAACAAATAGCAGTGTAATTTCATCATTAGCCT
ATGGAAGTAAAGTAGAAATACTATCTTCTAGCGGTGAGTGGTATAAAATTAACTTTAAAAATACTACAGGTTATGTGTAT
AGCAAATACATAAAAGATACAACTCAAAAAGTTGTGGCGTTTAATCAAATTGCTACACAAGATAAAAAGTATGGAGTTAA
AGAAAATAATGTTACTGTAGATAATAAGAGCGCTGAAGTAGTAAAGTCTAATACAGAAAATGAAAAAAAATTAGTTGCAA
TAAAGTCAGAAAAAGAACAAGAAAGAGAAAAATCATCTGAGCCTGTACAGACAAAAGCAACTGAAGAGGCTCAAAAAAAA
GCGGCTGAAGAAACTCAAAGAAAAGCGACTGAAGATGCTCAAAGAAAAGAAGCTGAAGAAGCTCAAAGAAAAGTAGCTGA
AGAGACTCAAAGAAAAGAAGCTGAAGAAGCCCAAAGAAAAGCAGCTGAAGAGGCTCAAAGAAAAGAAGCTGAAGAATCCC
AAAGAAAAGCGGCTGAAGAGACTCAAAGAAAAGAAGCTGAAGAAGCTCAAAGAAAAGAAGCTGAAGAAGCCCAAAGGAAA
GCGGCTGAAGCTGAGGCTTCTAAATCTCAACAAAAAGAACAAAGCAATGTATCAGAAAAAGCACCAGCAACAAATGGAGA
CGTAATATCATATGCTAGACAATATCTAGGTACTCCTTATGTCTATGGAGGAACTTCACCAAGTGGATTTGACTGCTCAG
GCTTTGTACAATATGTGTATAAAAATGCAGCGGGTATATCATTACCAAGAACTACTTATGATCAAATTGGAGTAGGTTCT
CGAGTTTCACAAGATCAATTACAACCTGGTGATTTAGTATTCCCAGATACAGGTCATGTAGGCATATATATAGGTGGAGG
ACAAATGATACACGCTTCAAAACCAGGTGATGTAGTAAAAATTTCATCAGTATGGGCATTTTATGCAGGAGTAAGAATAA
AATAA

Upstream 100 bases:

>100_bases
TAAAACTTTTGTTATTTCTTCTCTGTGGTATAATAAAATTGTTAGAATTAACGATAAATATTAATAAATACTTATTTTAA
ATATGAAGGGAGGATTTTCT

Downstream 100 bases:

>100_bases
CTAACAAACTTTTATATAAACAGATTTTAGTATGAATAAAAGGCCTACCCGCAAAATAATTGCTGGGGGCCTTTCCTGCT
TTTGCTTACTTCTTAATTGG

Product: NlpC/P60 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 774; Mature: 774

Protein sequence:

>774_residues
MNKSRKAFATCAVSAALLGQNFLFSQNVLAVSDSMYPNVNSNAYNSNNIFTQCGFKGQCTWFTYGRVLEKLNMKLPSQFY
GNAIDWWYSNIKSNTFSYGSEPQANSIVVWSGGSKGYGHVGFVEKVVGDTIYYNEGNVEKRGYYDGYVKTISKQAIKNRG
NLFLKGYIYLNGSSNSSNSNNDYTIIKTSKVSCSSLNVRSNPSLSSAVIGGVSKNQTLSVISESNGWSKIKYGSGVGYVS
SKYLYDENNTINSGNGGSSSNESVQPGFVKLSNSSSVLNVRSSANLSSNIIGSLKHGSSVSILGKTGSWYKIKYGSKTAY
VSSSYISSSNDSNSSSNTSSSTSTSKGTVKLSSTSSSLNLRENPSLSSKVLGGLSHGSSVDILDKAGSWYKVKYGSKIGY
VSSQFITTSNSSNNNGSSVTDKRFGTVYLSDKYSTLNVRKNAGTNSSVISSLAYGSKVEILSSSGEWYKINFKNTTGYVY
SKYIKDTTQKVVAFNQIATQDKKYGVKENNVTVDNKSAEVVKSNTENEKKLVAIKSEKEQEREKSSEPVQTKATEEAQKK
AAEETQRKATEDAQRKEAEEAQRKVAEETQRKEAEEAQRKAAEEAQRKEAEESQRKAAEETQRKEAEEAQRKEAEEAQRK
AAEAEASKSQQKEQSNVSEKAPATNGDVISYARQYLGTPYVYGGTSPSGFDCSGFVQYVYKNAAGISLPRTTYDQIGVGS
RVSQDQLQPGDLVFPDTGHVGIYIGGGQMIHASKPGDVVKISSVWAFYAGVRIK

Sequences:

>Translated_774_residues
MNKSRKAFATCAVSAALLGQNFLFSQNVLAVSDSMYPNVNSNAYNSNNIFTQCGFKGQCTWFTYGRVLEKLNMKLPSQFY
GNAIDWWYSNIKSNTFSYGSEPQANSIVVWSGGSKGYGHVGFVEKVVGDTIYYNEGNVEKRGYYDGYVKTISKQAIKNRG
NLFLKGYIYLNGSSNSSNSNNDYTIIKTSKVSCSSLNVRSNPSLSSAVIGGVSKNQTLSVISESNGWSKIKYGSGVGYVS
SKYLYDENNTINSGNGGSSSNESVQPGFVKLSNSSSVLNVRSSANLSSNIIGSLKHGSSVSILGKTGSWYKIKYGSKTAY
VSSSYISSSNDSNSSSNTSSSTSTSKGTVKLSSTSSSLNLRENPSLSSKVLGGLSHGSSVDILDKAGSWYKVKYGSKIGY
VSSQFITTSNSSNNNGSSVTDKRFGTVYLSDKYSTLNVRKNAGTNSSVISSLAYGSKVEILSSSGEWYKINFKNTTGYVY
SKYIKDTTQKVVAFNQIATQDKKYGVKENNVTVDNKSAEVVKSNTENEKKLVAIKSEKEQEREKSSEPVQTKATEEAQKK
AAEETQRKATEDAQRKEAEEAQRKVAEETQRKEAEEAQRKAAEEAQRKEAEESQRKAAEETQRKEAEEAQRKEAEEAQRK
AAEAEASKSQQKEQSNVSEKAPATNGDVISYARQYLGTPYVYGGTSPSGFDCSGFVQYVYKNAAGISLPRTTYDQIGVGS
RVSQDQLQPGDLVFPDTGHVGIYIGGGQMIHASKPGDVVKISSVWAFYAGVRIK
>Mature_774_residues
MNKSRKAFATCAVSAALLGQNFLFSQNVLAVSDSMYPNVNSNAYNSNNIFTQCGFKGQCTWFTYGRVLEKLNMKLPSQFY
GNAIDWWYSNIKSNTFSYGSEPQANSIVVWSGGSKGYGHVGFVEKVVGDTIYYNEGNVEKRGYYDGYVKTISKQAIKNRG
NLFLKGYIYLNGSSNSSNSNNDYTIIKTSKVSCSSLNVRSNPSLSSAVIGGVSKNQTLSVISESNGWSKIKYGSGVGYVS
SKYLYDENNTINSGNGGSSSNESVQPGFVKLSNSSSVLNVRSSANLSSNIIGSLKHGSSVSILGKTGSWYKIKYGSKTAY
VSSSYISSSNDSNSSSNTSSSTSTSKGTVKLSSTSSSLNLRENPSLSSKVLGGLSHGSSVDILDKAGSWYKVKYGSKIGY
VSSQFITTSNSSNNNGSSVTDKRFGTVYLSDKYSTLNVRKNAGTNSSVISSLAYGSKVEILSSSGEWYKINFKNTTGYVY
SKYIKDTTQKVVAFNQIATQDKKYGVKENNVTVDNKSAEVVKSNTENEKKLVAIKSEKEQEREKSSEPVQTKATEEAQKK
AAEETQRKATEDAQRKEAEEAQRKVAEETQRKEAEEAQRKAAEEAQRKEAEESQRKAAEETQRKEAEEAQRKEAEEAQRK
AAEAEASKSQQKEQSNVSEKAPATNGDVISYARQYLGTPYVYGGTSPSGFDCSGFVQYVYKNAAGISLPRTTYDQIGVGS
RVSQDQLQPGDLVFPDTGHVGIYIGGGQMIHASKPGDVVKISSVWAFYAGVRIK

Specific function: Probably involved in cell-wall metabolism [H]

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788501, Length=133, Percent_Identity=37.593984962406, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1787944, Length=113, Percent_Identity=38.0530973451327, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788001, Length=96, Percent_Identity=43.75, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786421, Length=100, Percent_Identity=39, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002508
- InterPro:   IPR017293
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01520 Amidase_3; PF08239 SH3_3 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 84146; Mature: 84146

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS50911 CHAP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSRKAFATCAVSAALLGQNFLFSQNVLAVSDSMYPNVNSNAYNSNNIFTQCGFKGQCT
CCCCHHHHHHHHHHHHHHCCCCEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCEE
WFTYGRVLEKLNMKLPSQFYGNAIDWWYSNIKSNTFSYGSEPQANSIVVWSGGSKGYGHV
EEHHHHHHHHHCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCH
GFVEKVVGDTIYYNEGNVEKRGYYDGYVKTISKQAIKNRGNLFLKGYIYLNGSSNSSNSN
HHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCC
NDYTIIKTSKVSCSSLNVRSNPSLSSAVIGGVSKNQTLSVISESNGWSKIKYGSGVGYVS
CCEEEEEECCCCEEECCCCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEECCCCCCCC
SKYLYDENNTINSGNGGSSSNESVQPGFVKLSNSSSVLNVRSSANLSSNIIGSLKHGSSV
CEEEECCCCEECCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCHHHHEECCCCCEE
SILGKTGSWYKIKYGSKTAYVSSSYISSSNDSNSSSNTSSSTSTSKGTVKLSSTSSSLNL
EEEECCCCEEEEEECCCEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
RENPSLSSKVLGGLSHGSSVDILDKAGSWYKVKYGSKIGYVSSQFITTSNSSNNNGSSVT
CCCCCHHHHHHCCCCCCCCEEEECCCCCEEEEEECCEECCEEEEEEEECCCCCCCCCCCC
DKRFGTVYLSDKYSTLNVRKNAGTNSSVISSLAYGSKVEILSSSGEWYKINFKNTTGYVY
CCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCEEEEEEECCCCHHH
SKYIKDTTQKVVAFNQIATQDKKYGVKENNVTVDNKSAEVVKSNTENEKKLVAIKSEKEQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHCCCCCCEEEEEEECHHHH
EREKSSEPVQTKATEEAQKKAAEETQRKATEDAQRKEAEEAQRKVAEETQRKEAEEAQRK
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAEEAQRKEAEESQRKAAEETQRKEAEEAQRKEAEEAQRKAAEAEASKSQQKEQSNVSEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
APATNGDVISYARQYLGTPYVYGGTSPSGFDCSGFVQYVYKNAAGISLPRTTYDQIGVGS
CCCCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCC
RVSQDQLQPGDLVFPDTGHVGIYIGGGQMIHASKPGDVVKISSVWAFYAGVRIK
CCCHHCCCCCCEECCCCCCEEEEECCCEEEECCCCCCEEEEHHHHHHHCCCEEC
>Mature Secondary Structure
MNKSRKAFATCAVSAALLGQNFLFSQNVLAVSDSMYPNVNSNAYNSNNIFTQCGFKGQCT
CCCCHHHHHHHHHHHHHHCCCCEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCEE
WFTYGRVLEKLNMKLPSQFYGNAIDWWYSNIKSNTFSYGSEPQANSIVVWSGGSKGYGHV
EEHHHHHHHHHCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCH
GFVEKVVGDTIYYNEGNVEKRGYYDGYVKTISKQAIKNRGNLFLKGYIYLNGSSNSSNSN
HHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCC
NDYTIIKTSKVSCSSLNVRSNPSLSSAVIGGVSKNQTLSVISESNGWSKIKYGSGVGYVS
CCEEEEEECCCCEEECCCCCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEEECCCCCCCC
SKYLYDENNTINSGNGGSSSNESVQPGFVKLSNSSSVLNVRSSANLSSNIIGSLKHGSSV
CEEEECCCCEECCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCHHHHEECCCCCEE
SILGKTGSWYKIKYGSKTAYVSSSYISSSNDSNSSSNTSSSTSTSKGTVKLSSTSSSLNL
EEEECCCCEEEEEECCCEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
RENPSLSSKVLGGLSHGSSVDILDKAGSWYKVKYGSKIGYVSSQFITTSNSSNNNGSSVT
CCCCCHHHHHHCCCCCCCCEEEECCCCCEEEEEECCEECCEEEEEEEECCCCCCCCCCCC
DKRFGTVYLSDKYSTLNVRKNAGTNSSVISSLAYGSKVEILSSSGEWYKINFKNTTGYVY
CCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCEEEEEEECCCCHHH
SKYIKDTTQKVVAFNQIATQDKKYGVKENNVTVDNKSAEVVKSNTENEKKLVAIKSEKEQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHCCCCCCEEEEEEECHHHH
EREKSSEPVQTKATEEAQKKAAEETQRKATEDAQRKEAEEAQRKVAEETQRKEAEEAQRK
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAEEAQRKEAEESQRKAAEETQRKEAEEAQRKEAEEAQRKAAEAEASKSQQKEQSNVSEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
APATNGDVISYARQYLGTPYVYGGTSPSGFDCSGFVQYVYKNAAGISLPRTTYDQIGVGS
CCCCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCC
RVSQDQLQPGDLVFPDTGHVGIYIGGGQMIHASKPGDVVKISSVWAFYAGVRIK
CCCHHCCCCCCEECCCCCCEEEEECCCEEEECCCCCCEEEEHHHHHHHCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]