Click here to switch to the map view.

The map label for this gene is hypA [H]

Identifier: 226947669

GI number: 226947669

Start: 557931

End: 558272

Strand: Direct

Name: hypA [H]

Synonym: CLM_0513

Alternate gene names: 226947669

Gene position: 557931-558272 (Clockwise)

Preceding gene: 226947668

Following gene: 226947670

Centisome position: 13.43

GC content: 32.75

Gene sequence:

>342_bases
TTGCATGAACTTGGGGTTATTATTGAAGTAGTAAAGACTGTAGAAGATATTGCTATAAAAAATCATTTGACCAAAATAGA
TACCATTGTTTTGCAAATTGGAGAGTTATCTTCTATGATTCCTAAGTATATTGAAGAGTGTTATCCTGCAGCTGTGGATG
GTACGATAATGGAATCCACAAAGTTGAAAATTGAAATATTGCCAGGAAATGCCTTATGCAAAAAGTGTAATAAAGTTTAC
AATATCATGGCAAATAGAAGGGGATGCCCTTACTGTGAAAGTAGGGAGTGGGAGTTATTATGTGGAAAAGAGTTTTTAAT
TAAAGAAATATTAGCCTATTAG

Upstream 100 bases:

>100_bases
AAAGTAAAGATTACAACTAAAAAGGTAAAAACATTATTTAAATAATTGTATGTAGCAGAATAGTTTTATATCTAAGTTGT
ATTATTGGAGGTGTGTTTTG

Downstream 100 bases:

>100_bases
ATAATCAAAAATTTTAGAGATGTAAAGGGGGAGAAAAATGTTTGAATTTAACTATGCTGAAGGAGCAACTATATTTACTG
CATTGGGAATATGGTTTATT

Product: hydrogenase nickel insertion protein HypA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MHELGVIIEVVKTVEDIAIKNHLTKIDTIVLQIGELSSMIPKYIEECYPAAVDGTIMESTKLKIEILPGNALCKKCNKVY
NIMANRRGCPYCESREWELLCGKEFLIKEILAY

Sequences:

>Translated_113_residues
MHELGVIIEVVKTVEDIAIKNHLTKIDTIVLQIGELSSMIPKYIEECYPAAVDGTIMESTKLKIEILPGNALCKKCNKVY
NIMANRRGCPYCESREWELLCGKEFLIKEILAY
>Mature_113_residues
MHELGVIIEVVKTVEDIAIKNHLTKIDTIVLQIGELSSMIPKYIEECYPAAVDGTIMESTKLKIEILPGNALCKKCNKVY
NIMANRRGCPYCESREWELLCGKEFLIKEILAY

Specific function: Probably plays a role in an hydrogenase nickel cofactor insertion step [H]

COG id: COG0375

COG function: function code R; Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypA/hybF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000688 [H]

Pfam domain/function: PF01155 HypA [H]

EC number: NA

Molecular weight: Translated: 12833; Mature: 12833

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHELGVIIEVVKTVEDIAIKNHLTKIDTIVLQIGELSSMIPKYIEECYPAAVDGTIMEST
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCC
KLKIEILPGNALCKKCNKVYNIMANRRGCPYCESREWELLCGKEFLIKEILAY
EEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHCC
>Mature Secondary Structure
MHELGVIIEVVKTVEDIAIKNHLTKIDTIVLQIGELSSMIPKYIEECYPAAVDGTIMEST
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCC
KLKIEILPGNALCKKCNKVYNIMANRRGCPYCESREWELLCGKEFLIKEILAY
EEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11572948; 12692562 [H]