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The map label for this gene is yaiC [C]

Identifier: 226947564

GI number: 226947564

Start: 420759

End: 422462

Strand: Direct

Name: yaiC [C]

Synonym: CLM_0401

Alternate gene names: 226947564

Gene position: 420759-422462 (Clockwise)

Preceding gene: 226947563

Following gene: 226947565

Centisome position: 10.13

GC content: 26.35

Gene sequence:

>1704_bases
ATGAATGATGTAGGAAATAATAAACGTAATCAGATAAATAATATAGTATCTGTAGTAAAATTATGTTCTTTATTATTTTC
AGCTATAGCAATATTTAAATGTTTTTTTAGTGGAAATAATAAGGCGTTAGACTATAAAAATAATATGTCTGCTATACATA
TTATTTCTACTACTATATTAATTTTTTCTTTAATATATTGTATATGGGTATTTTTAACAACTAATAAATTTAGAGGAAGA
TATAATAAGAGGATATACTTTATTGAAAATATAGTACTTATTTTATTATTTTTCGTTGTAGTTTTAGGGACAGGTACGTA
TGCTAGCCAATATAAATTTTTATTTTTATTTATGATTATAATAACAACTATACAATCAGGAATGAAATATGGAATAATAA
TAGCTTGTTTAGCTTCATTTATTATTTTAATTATGGATATTGTATGTGCGCCCAATTTAGTAGTTAATGAATATTTTGAA
CAGGATTTGATATTAGCAGGAGTATTTATACTTACAGCTTGGCCTTTAGGCTTTTATGTAAAGGTTGAAAATGAACACAT
CGAAAAGCTTGAAAGCTTGGTTAATAAGGATGGACTTACAGATGTATACAATCATAGATTTTTTCATGATGCTTTAAGCA
AAGAAGTGATAGAGTGTGAAGAGAAAAATGAAGCTCTTTCTATGATATTTATTGATATAGATTATTTTAAACATTATAAC
GATTTATATGGTCACCAAAAGGGAGATCAGGTACTTAAAACTATAGGTGAAATATTAAAAAATAATACAAGAAAAGAAGA
TATAGTAGCAAGATATGGAGGAGAAGAATTTGCAGTATTATTACCCAATACTTCAGAACAAGATGCTATTAATATAGCAG
AAAAGATAAGAAAAAAAATAGAATATACTTATTTTGAAGGTGAAGAAAATCAACCTAATGGTAATTTAACTGTATCAATG
GGAATATCCGTATACCCTTATAAAGCTAAAAGTGATATGGAACTTATTAAGAGTGCTGATGATGCTCTTTATAGAGCTAA
ATTTTTTAATAAAAATAGGGTTGAAGCCTATACTTCCATTTTAGATGAACTTAAAAATGATATTGATGAAGAACATATAG
ATTTAGTTACATCAATAAAAACATTAATAAGTGTTATTAATGCTAAAGATAGATATACATATGGACACGTTGAAAGAGTA
GTTCTTTATAGTAGGTTATTAGCGGACAAGCTTAAGTTATCCGAAGAGGATAAAAAAAATTTTATATATGGAGCTTATAT
GCATGATATAGGTAAAATAAATATTTCGAGAGAGATATTAAATAAAAAAATGCCTCTAGCAAAGGAAGAATGGGAAATAC
TAAAACAGCATCCAGTAAATGGAGTAGAAATAATAAAACCTGTTAGTTCCCTTCAAAATATTTCTGATTTAATATTACAT
CATCATGAAAGATATGATGGAAAAGGCTATCCAGATAAACTTAAAGGGGATAATATACCTTTTCTTGCTAGAGCATTAAC
TGTAGTAGATAGTTTTGATGCTATGACCTCTAATAGGCCTTATAATAGAAGAAAGACATATGAAGAGGCTATTAAAGAAT
TAAAAAGATGTAGTGGTACTCAATTCGATTCATATATTGCAGAAAAATTTATAGAGGTTATTATAGAAAATAAGGATAGT
TTTGATGATTTGAGTTTATTATAA

Upstream 100 bases:

>100_bases
AAGAGCCAAAATGTTTAAGAGAAGAATAAAAAAGAGATCGAGATCGGTTTAACCGATCTTTCTTGTTAGAAAATAATTTA
TATTGACGAGGTACAATGAC

Downstream 100 bases:

>100_bases
TAGAGGTATATGCCAATTATGCAGATAAAGTAAGCAATATTCATTTTACAATGGCCATTCTTCCCCAATCTGTACTAATG
CGATAGAAACTATATTAAAC

Product: GGDEF/HD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 567

Protein sequence:

>567_residues
MNDVGNNKRNQINNIVSVVKLCSLLFSAIAIFKCFFSGNNKALDYKNNMSAIHIISTTILIFSLIYCIWVFLTTNKFRGR
YNKRIYFIENIVLILLFFVVVLGTGTYASQYKFLFLFMIIITTIQSGMKYGIIIACLASFIILIMDIVCAPNLVVNEYFE
QDLILAGVFILTAWPLGFYVKVENEHIEKLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYN
DLYGHQKGDQVLKTIGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRKKIEYTYFEGEENQPNGNLTVSM
GISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSILDELKNDIDEEHIDLVTSIKTLISVINAKDRYTYGHVERV
VLYSRLLADKLKLSEEDKKNFIYGAYMHDIGKINISREILNKKMPLAKEEWEILKQHPVNGVEIIKPVSSLQNISDLILH
HHERYDGKGYPDKLKGDNIPFLARALTVVDSFDAMTSNRPYNRRKTYEEAIKELKRCSGTQFDSYIAEKFIEVIIENKDS
FDDLSLL

Sequences:

>Translated_567_residues
MNDVGNNKRNQINNIVSVVKLCSLLFSAIAIFKCFFSGNNKALDYKNNMSAIHIISTTILIFSLIYCIWVFLTTNKFRGR
YNKRIYFIENIVLILLFFVVVLGTGTYASQYKFLFLFMIIITTIQSGMKYGIIIACLASFIILIMDIVCAPNLVVNEYFE
QDLILAGVFILTAWPLGFYVKVENEHIEKLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYN
DLYGHQKGDQVLKTIGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRKKIEYTYFEGEENQPNGNLTVSM
GISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSILDELKNDIDEEHIDLVTSIKTLISVINAKDRYTYGHVERV
VLYSRLLADKLKLSEEDKKNFIYGAYMHDIGKINISREILNKKMPLAKEEWEILKQHPVNGVEIIKPVSSLQNISDLILH
HHERYDGKGYPDKLKGDNIPFLARALTVVDSFDAMTSNRPYNRRKTYEEAIKELKRCSGTQFDSYIAEKFIEVIIENKDS
FDDLSLL
>Mature_567_residues
MNDVGNNKRNQINNIVSVVKLCSLLFSAIAIFKCFFSGNNKALDYKNNMSAIHIISTTILIFSLIYCIWVFLTTNKFRGR
YNKRIYFIENIVLILLFFVVVLGTGTYASQYKFLFLFMIIITTIQSGMKYGIIIACLASFIILIMDIVCAPNLVVNEYFE
QDLILAGVFILTAWPLGFYVKVENEHIEKLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYN
DLYGHQKGDQVLKTIGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRKKIEYTYFEGEENQPNGNLTVSM
GISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSILDELKNDIDEEHIDLVTSIKTLISVINAKDRYTYGHVERV
VLYSRLLADKLKLSEEDKKNFIYGAYMHDIGKINISREILNKKMPLAKEEWEILKQHPVNGVEIIKPVSSLQNISDLILH
HHERYDGKGYPDKLKGDNIPFLARALTVVDSFDAMTSNRPYNRRKTYEEAIKELKRCSGTQFDSYIAEKFIEVIIENKDS
FDDLSLL

Specific function: Unknown

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HD domain [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=39.6449704142012, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=35.8823529411765, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=34.1463414634146, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1787802, Length=269, Percent_Identity=28.6245353159851, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=34.7560975609756, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1788085, Length=172, Percent_Identity=31.9767441860465, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1788381, Length=173, Percent_Identity=28.9017341040462, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787541, Length=187, Percent_Identity=26.7379679144385, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787816, Length=182, Percent_Identity=31.3186813186813, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI87081974, Length=192, Percent_Identity=28.125, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI87081977, Length=153, Percent_Identity=30.718954248366, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003607 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 65387; Mature: 65387

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDVGNNKRNQINNIVSVVKLCSLLFSAIAIFKCFFSGNNKALDYKNNMSAIHIISTTIL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
IFSLIYCIWVFLTTNKFRGRYNKRIYFIENIVLILLFFVVVLGTGTYASQYKFLFLFMII
HHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ITTIQSGMKYGIIIACLASFIILIMDIVCAPNLVVNEYFEQDLILAGVFILTAWPLGFYV
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
KVENEHIEKLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYN
EECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHH
DLYGHQKGDQVLKTIGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRKKI
HHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
EYTYFEGEENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI
CEEEECCCCCCCCCCEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LDELKNDIDEEHIDLVTSIKTLISVINAKDRYTYGHVERVVLYSRLLADKLKLSEEDKKN
HHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
FIYGAYMHDIGKINISREILNKKMPLAKEEWEILKQHPVNGVEIIKPVSSLQNISDLILH
CEEEHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
HHERYDGKGYPDKLKGDNIPFLARALTVVDSFDAMTSNRPYNRRKTYEEAIKELKRCSGT
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
QFDSYIAEKFIEVIIENKDSFDDLSLL
CHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNDVGNNKRNQINNIVSVVKLCSLLFSAIAIFKCFFSGNNKALDYKNNMSAIHIISTTIL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
IFSLIYCIWVFLTTNKFRGRYNKRIYFIENIVLILLFFVVVLGTGTYASQYKFLFLFMII
HHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ITTIQSGMKYGIIIACLASFIILIMDIVCAPNLVVNEYFEQDLILAGVFILTAWPLGFYV
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
KVENEHIEKLESLVNKDGLTDVYNHRFFHDALSKEVIECEEKNEALSMIFIDIDYFKHYN
EECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHH
DLYGHQKGDQVLKTIGEILKNNTRKEDIVARYGGEEFAVLLPNTSEQDAINIAEKIRKKI
HHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
EYTYFEGEENQPNGNLTVSMGISVYPYKAKSDMELIKSADDALYRAKFFNKNRVEAYTSI
CEEEECCCCCCCCCCEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LDELKNDIDEEHIDLVTSIKTLISVINAKDRYTYGHVERVVLYSRLLADKLKLSEEDKKN
HHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
FIYGAYMHDIGKINISREILNKKMPLAKEEWEILKQHPVNGVEIIKPVSSLQNISDLILH
CEEEHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
HHERYDGKGYPDKLKGDNIPFLARALTVVDSFDAMTSNRPYNRRKTYEEAIKELKRCSGT
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
QFDSYIAEKFIEVIIENKDSFDDLSLL
CHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]