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The map label for this gene is ybbH [H]

Identifier: 226947495

GI number: 226947495

Start: 314421

End: 315200

Strand: Reverse

Name: ybbH [H]

Synonym: CLM_0329

Alternate gene names: 226947495

Gene position: 315200-314421 (Counterclockwise)

Preceding gene: 226947505

Following gene: 226947494

Centisome position: 7.59

GC content: 24.87

Gene sequence:

>780_bases
TTGTTAGATTGTATCGATAATAGTATTTTAAATACATTAACCCAAAGTGAATTATCTGTACTTCAATATATCGATGTCCA
CTCCAATGAAGTACTTACTATGAGTATTCAGGAATTAAGTGAAAAAGTTTTTTTCTCAACTGCTACAATTTTACGTCTAT
GTAAAAAACTTAATCTTAGTGGATTTTCCGAACTTAAATTTACTTTAAAAAATAATGTTTCTTTCAATAATTCACTTAAA
TCCACAGCTGTTTCTACTAAAAAAATAGTAACAGATTTATACAGTGAAATCGAAAATACAGGACGTCTTCTTGATACAAA
AACATTAGATACTATTGTGGGTTATCTTTTAAGCAATAAAAAAATTCATTTATTCTCCTATGGGTTAACTAATATGGCAT
TTGAATATATGCAAAGATATCTTTTAGCAACTGGTCGTCAAACTATTTTATATAAAACAGATACTTTAGCATATAAAGCT
GTAAATAATTTAACGGAAAATGATGTTCTATTTTTATCTAGTTCTACTGGCTCAAATCCTTCTACTTTAAAGCTTGCTAA
AATCGCTAAAAATAGTAATACAATCATTGTGGCAATTACTCCATTTACTAACAATCCGTTATCTAAAATTGCAGATATAA
ATCTCTATACTTTTATAAAAGAAAGAGATTTTTTTGATTCTGATATAAAAAATAGAACCTGTATTTTCTATATTGTAGAT
ATGATAATAGAATGTTATATTAAATATTTAGATAAATCAAAATTTAATAATTTATATTAA

Upstream 100 bases:

>100_bases
CTAATAATATTATTATATTTATCAATCCTTCCCATTTCTTGAAAGATATAATTTATTTTGATATACTTATGTGAAATATA
AAGAAAGGATTTGACGAAAA

Downstream 100 bases:

>100_bases
AAGGAGAACCACGTCATGATAGATGACTTAGATGAAAAAATTTTAAAAAAACTAACTCCAAATGAAAAGGATTTATTAAA
TTATATTAATTCTAATAAAT

Product: RpiR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MLDCIDNSILNTLTQSELSVLQYIDVHSNEVLTMSIQELSEKVFFSTATILRLCKKLNLSGFSELKFTLKNNVSFNNSLK
STAVSTKKIVTDLYSEIENTGRLLDTKTLDTIVGYLLSNKKIHLFSYGLTNMAFEYMQRYLLATGRQTILYKTDTLAYKA
VNNLTENDVLFLSSSTGSNPSTLKLAKIAKNSNTIIVAITPFTNNPLSKIADINLYTFIKERDFFDSDIKNRTCIFYIVD
MIIECYIKYLDKSKFNNLY

Sequences:

>Translated_259_residues
MLDCIDNSILNTLTQSELSVLQYIDVHSNEVLTMSIQELSEKVFFSTATILRLCKKLNLSGFSELKFTLKNNVSFNNSLK
STAVSTKKIVTDLYSEIENTGRLLDTKTLDTIVGYLLSNKKIHLFSYGLTNMAFEYMQRYLLATGRQTILYKTDTLAYKA
VNNLTENDVLFLSSSTGSNPSTLKLAKIAKNSNTIIVAITPFTNNPLSKIADINLYTFIKERDFFDSDIKNRTCIFYIVD
MIIECYIKYLDKSKFNNLY
>Mature_259_residues
MLDCIDNSILNTLTQSELSVLQYIDVHSNEVLTMSIQELSEKVFFSTATILRLCKKLNLSGFSELKFTLKNNVSFNNSLK
STAVSTKKIVTDLYSEIENTGRLLDTKTLDTIVGYLLSNKKIHLFSYGLTNMAFEYMQRYLLATGRQTILYKTDTLAYKA
VNNLTENDVLFLSSSTGSNPSTLKLAKIAKNSNTIIVAITPFTNNPLSKIADINLYTFIKERDFFDSDIKNRTCIFYIVD
MIIECYIKYLDKSKFNNLY

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788767, Length=248, Percent_Identity=21.3709677419355, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788159, Length=242, Percent_Identity=24.7933884297521, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 29499; Mature: 29499

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDCIDNSILNTLTQSELSVLQYIDVHSNEVLTMSIQELSEKVFFSTATILRLCKKLNLS
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCC
GFSELKFTLKNNVSFNNSLKSTAVSTKKIVTDLYSEIENTGRLLDTKTLDTIVGYLLSNK
CHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHCCC
KIHLFSYGLTNMAFEYMQRYLLATGRQTILYKTDTLAYKAVNNLTENDVLFLSSSTGSNP
EEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCCCCEEEEECCCCCCC
STLKLAKIAKNSNTIIVAITPFTNNPLSKIADINLYTFIKERDFFDSDIKNRTCIFYIVD
CEEEEEEECCCCCEEEEEEECCCCCHHHHHHCCHHEEEEECCCCCCCCCCCCCHHHHHHH
MIIECYIKYLDKSKFNNLY
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLDCIDNSILNTLTQSELSVLQYIDVHSNEVLTMSIQELSEKVFFSTATILRLCKKLNLS
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCC
GFSELKFTLKNNVSFNNSLKSTAVSTKKIVTDLYSEIENTGRLLDTKTLDTIVGYLLSNK
CHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHCCC
KIHLFSYGLTNMAFEYMQRYLLATGRQTILYKTDTLAYKAVNNLTENDVLFLSSSTGSNP
EEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCCCCEEEEECCCCCCC
STLKLAKIAKNSNTIIVAITPFTNNPLSKIADINLYTFIKERDFFDSDIKNRTCIFYIVD
CEEEEEEECCCCCEEEEEEECCCCCHHHHHHCCHHEEEEECCCCCCCCCCCCCHHHHHHH
MIIECYIKYLDKSKFNNLY
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377 [H]