| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is yrrC [H]
Identifier: 226947391
GI number: 226947391
Start: 196598
End: 198832
Strand: Direct
Name: yrrC [H]
Synonym: CLM_0217
Alternate gene names: 226947391
Gene position: 196598-198832 (Clockwise)
Preceding gene: 226947390
Following gene: 226947392
Centisome position: 4.73
GC content: 29.35
Gene sequence:
>2235_bases ATGCAGGAAATACAGGGATTTATAGAGGATATACTTTTTAAAAATGATGAAAATGGGTATGTAGTGGCAAAAATAAGGAA GAAGAAAGAGCTTATAACCATAGTCGGATGTATGCCCTACATAACAGAAGGACAAAACTTAAAATTAAAAGGTGAATGGG TAATTCATCCACAATTTGGTAATCAATTCAAAGTAGAAGTATGTGAAGAAATAGTACCCGATACTGTAGCTGGTATAGAA AGATATTTATCCTCAGGAATCATATCAGGTATAGGCCCAGTGACTGCAAAAAAAATTGTGAAAAAATTTGGAGAAGAAAC ATTAAATATATTAGACAGTAATATAGAAAGATTAACAGAGATAGAGGGAATAGGAAAGAAGAAGATAGAGGTAATATATG ATTCCTATATAAAACAAAATGAAGTGCGAAATATAATGATGTTTTTTCAAAATTACGGAGTTACACCTAACCAATGCATG AAAGTTTATAAAAGATTTGGAGAAAATTCTATATCAATAGTTAAAGAGAATCCATATATACTTACGGAAGAAATAAGAGG AATAGGTTTCAAGACAGCAGATAAAATAGCTAGGAGCTTAGGAATAGCCTCTAATTCACCTTTTAGAATTCAGAGTGGAA TAAATTATATAATAAATGGATTCTGTAGTTTAGGGAATACTTATATGCCTTTAGAGAAGCTTGTAAGTGAGGCTATGGAC ATATTAGGGGTAAGAGAAGAAGAAATACATGAAAATATATATAATAATATAGCAGAAAATAAATTAAAGATAGAAAAAGT AAAAGAACAAAGTTGTGTTTTTACTCTACCGTATTATTATTGCGAATTAGGAGTTACAAAAAAAATACTTAGCTTATCTT TGTCACAATATGATAATTTAAATATAAATATAGAAGACGAGATAGTGAGTTTTGAAAAAAATAATAATATAAAATTTCAT GATTCTCAAAGAGAGGCTATAAAAGGTGCCTTAGAAAATGGAGTAGAAATAATAACAGGAGGCCCTGGTACAGGAAAAAC AACTATTATCAATTGTATAACAGAGATATTTGAAAAAGCTAATATGAAAGTTTATATGGCAGCACCTACAGGAAGAGCGG CTAAAAGAATGTCTGAAACTACAGGTAGAGAAGCTAAAACAATACATAGGATGTTAGAAATGGGTGTATCTGAGGATGAC ACAGAAGAAGTTTTTTCTAAAGGTGAAGAAACTCCTTTAGAATGTGATGTAGTAATAATAGATGAAGCCTCCATGATAGA TATAATATTAATGAATACACTGTTAAAGGCCATAGCTTTAGGTACAAGAATAATAATAGTTGGGGATGTAGATCAACTTC CCTCAGTAGGTCCAGGGAATGTATTAAGAGATTTAATAGAAAGTAAGTGTGTAAAGGTAGTTAGATTAAAGGAGATATTC AGACAATCTAAAGAAAGTATGATTATAGTAAATGCCCATAGAATAAATGATGGAGAGATGCCAATTATAAATAAAAAAGA TAAAGATTTTTATTTTATAGAATGTAGTGAACCTAAAAAAATAGTTAATACATTATTAGAACTTTCAAATAGAAGATTGC CTAAATTTAATAAAAGTTGGCATAAAATTCATGATATACAAATACTATCTCCAATGAGAAAGGGAGTTCTAGGAGTTTCT AGTTTAAATAAGGAATTACAATCTGTTTTAAACCCTAAAAATGATTCAAAAAAAGAAATGGAATTTAAGGATTATATATT TAGAGTAGGAGATAAAGTTATGCAAACCAAAAATAACTACTCTTTAAAGTGGACCAGAGCAAGTGGTGAGGGGGAAGCAG AAGGGTTAGGAATATTTAATGGAGATGTAGGATATATAGAGGATATAGATGAGGAAAAAGAAACAATTCAGGTCTTATTT GATAATGAAAGAAGAGTAATATATGAAAATTTATATTTAGATGAAATAGATTTAGCTTATGCTGTAACTATTCATAAAAG TCAAGGTAGCGAATTTCCAGTAGTAATTATGCCAGCTTTTAAAGGTCCCCCACTTTTAATGAATAGAAATTTATTGTATA CAGGAATAACAAGAGCAAAAAGGCTTGTTGTCTTGGTAGGATCTTTAAAATCTATTAATTTTATGGTACAGAATGATAAA ATTTTTGAAAGATACTCTCTTTTAAAGTGGCGTATAAGTAATATTTTAGATACTGAAATTATAAATGGAGAATAA
Upstream 100 bases:
>100_bases AATGAATGGCTAAAATTAAAAAAGTATAGATTCCTATACTTATAAGCAGCGGTACTATGAATAATAATGATGGAATGAAA AAGATTAGGAGAGATTTTTT
Downstream 100 bases:
>100_bases TATATTATATAGAAGGTGAACCTGTATGTCTTTACTTAAAAGGTCCAAAAAAGAATATGAAGTTAATGAATTTAGTCAAA TTATATTAAATTGGTGTAAA
Product: helicase, RecD/TraA family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 744; Mature: 744
Protein sequence:
>744_residues MQEIQGFIEDILFKNDENGYVVAKIRKKKELITIVGCMPYITEGQNLKLKGEWVIHPQFGNQFKVEVCEEIVPDTVAGIE RYLSSGIISGIGPVTAKKIVKKFGEETLNILDSNIERLTEIEGIGKKKIEVIYDSYIKQNEVRNIMMFFQNYGVTPNQCM KVYKRFGENSISIVKENPYILTEEIRGIGFKTADKIARSLGIASNSPFRIQSGINYIINGFCSLGNTYMPLEKLVSEAMD ILGVREEEIHENIYNNIAENKLKIEKVKEQSCVFTLPYYYCELGVTKKILSLSLSQYDNLNINIEDEIVSFEKNNNIKFH DSQREAIKGALENGVEIITGGPGTGKTTIINCITEIFEKANMKVYMAAPTGRAAKRMSETTGREAKTIHRMLEMGVSEDD TEEVFSKGEETPLECDVVIIDEASMIDIILMNTLLKAIALGTRIIIVGDVDQLPSVGPGNVLRDLIESKCVKVVRLKEIF RQSKESMIIVNAHRINDGEMPIINKKDKDFYFIECSEPKKIVNTLLELSNRRLPKFNKSWHKIHDIQILSPMRKGVLGVS SLNKELQSVLNPKNDSKKEMEFKDYIFRVGDKVMQTKNNYSLKWTRASGEGEAEGLGIFNGDVGYIEDIDEEKETIQVLF DNERRVIYENLYLDEIDLAYAVTIHKSQGSEFPVVIMPAFKGPPLLMNRNLLYTGITRAKRLVVLVGSLKSINFMVQNDK IFERYSLLKWRISNILDTEIINGE
Sequences:
>Translated_744_residues MQEIQGFIEDILFKNDENGYVVAKIRKKKELITIVGCMPYITEGQNLKLKGEWVIHPQFGNQFKVEVCEEIVPDTVAGIE RYLSSGIISGIGPVTAKKIVKKFGEETLNILDSNIERLTEIEGIGKKKIEVIYDSYIKQNEVRNIMMFFQNYGVTPNQCM KVYKRFGENSISIVKENPYILTEEIRGIGFKTADKIARSLGIASNSPFRIQSGINYIINGFCSLGNTYMPLEKLVSEAMD ILGVREEEIHENIYNNIAENKLKIEKVKEQSCVFTLPYYYCELGVTKKILSLSLSQYDNLNINIEDEIVSFEKNNNIKFH DSQREAIKGALENGVEIITGGPGTGKTTIINCITEIFEKANMKVYMAAPTGRAAKRMSETTGREAKTIHRMLEMGVSEDD TEEVFSKGEETPLECDVVIIDEASMIDIILMNTLLKAIALGTRIIIVGDVDQLPSVGPGNVLRDLIESKCVKVVRLKEIF RQSKESMIIVNAHRINDGEMPIINKKDKDFYFIECSEPKKIVNTLLELSNRRLPKFNKSWHKIHDIQILSPMRKGVLGVS SLNKELQSVLNPKNDSKKEMEFKDYIFRVGDKVMQTKNNYSLKWTRASGEGEAEGLGIFNGDVGYIEDIDEEKETIQVLF DNERRVIYENLYLDEIDLAYAVTIHKSQGSEFPVVIMPAFKGPPLLMNRNLLYTGITRAKRLVVLVGSLKSINFMVQNDK IFERYSLLKWRISNILDTEIINGE >Mature_744_residues MQEIQGFIEDILFKNDENGYVVAKIRKKKELITIVGCMPYITEGQNLKLKGEWVIHPQFGNQFKVEVCEEIVPDTVAGIE RYLSSGIISGIGPVTAKKIVKKFGEETLNILDSNIERLTEIEGIGKKKIEVIYDSYIKQNEVRNIMMFFQNYGVTPNQCM KVYKRFGENSISIVKENPYILTEEIRGIGFKTADKIARSLGIASNSPFRIQSGINYIINGFCSLGNTYMPLEKLVSEAMD ILGVREEEIHENIYNNIAENKLKIEKVKEQSCVFTLPYYYCELGVTKKILSLSLSQYDNLNINIEDEIVSFEKNNNIKFH DSQREAIKGALENGVEIITGGPGTGKTTIINCITEIFEKANMKVYMAAPTGRAAKRMSETTGREAKTIHRMLEMGVSEDD TEEVFSKGEETPLECDVVIIDEASMIDIILMNTLLKAIALGTRIIIVGDVDQLPSVGPGNVLRDLIESKCVKVVRLKEIF RQSKESMIIVNAHRINDGEMPIINKKDKDFYFIECSEPKKIVNTLLELSNRRLPKFNKSWHKIHDIQILSPMRKGVLGVS SLNKELQSVLNPKNDSKKEMEFKDYIFRVGDKVMQTKNNYSLKWTRASGEGEAEGLGIFNGDVGYIEDIDEEKETIQVLF DNERRVIYENLYLDEIDLAYAVTIHKSQGSEFPVVIMPAFKGPPLLMNRNLLYTGITRAKRLVVLVGSLKSINFMVQNDK IFERYSLLKWRISNILDTEIINGE
Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789182, Length=430, Percent_Identity=26.046511627907, Blast_Score=119, Evalue=9e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR006345 [H]
Pfam domain/function: NA
EC number: 3.1.11.5
Molecular weight: Translated: 84479; Mature: 84479
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQEIQGFIEDILFKNDENGYVVAKIRKKKELITIVGCMPYITEGQNLKLKGEWVIHPQFG CHHHHHHHHHHHEECCCCCEEEEEEECCCCEEEEEECCHHHCCCCCEEEEEEEEEECCCC NQFKVEVCEEIVPDTVAGIERYLSSGIISGIGPVTAKKIVKKFGEETLNILDSNIERLTE CEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEGIGKKKIEVIYDSYIKQNEVRNIMMFFQNYGVTPNQCMKVYKRFGENSISIVKENPYI HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCEE LTEEIRGIGFKTADKIARSLGIASNSPFRIQSGINYIINGFCSLGNTYMPLEKLVSEAMD EEHHHCCCCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHH ILGVREEEIHENIYNNIAENKLKIEKVKEQSCVFTLPYYYCELGVTKKILSLSLSQYDNL HHCCCHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEHHHHHHHCHHHHHHHHHHHHCCCC NINIEDEIVSFEKNNNIKFHDSQREAIKGALENGVEIITGGPGTGKTTIINCITEIFEKA CEEEHHHEEEEECCCCEEEECCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC NMKVYMAAPTGRAAKRMSETTGREAKTIHRMLEMGVSEDDTEEVFSKGEETPLECDVVII CCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEE DEASMIDIILMNTLLKAIALGTRIIIVGDVDQLPSVGPGNVLRDLIESKCVKVVRLKEIF CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH RQSKESMIIVNAHRINDGEMPIINKKDKDFYFIECSEPKKIVNTLLELSNRRLPKFNKSW HCCCCCEEEEEEEECCCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCH HKIHDIQILSPMRKGVLGVSSLNKELQSVLNPKNDSKKEMEFKDYIFRVGDKVMQTKNNY HHHHHHHHHHHHHHCHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC SLKWTRASGEGEAEGLGIFNGDVGYIEDIDEEKETIQVLFDNERRVIYENLYLDEIDLAY EEEEEECCCCCCCCCEEEECCCCCCHHCCCCHHHEEEEEECCCCEEEEEEEEEECCCEEE AVTIHKSQGSEFPVVIMPAFKGPPLLMNRNLLYTGITRAKRLVVLVGSLKSINFMVQNDK EEEEECCCCCCCCEEEEECCCCCCEEECCCEEEECHHHHHEEEEEEECCCEEEEEEECCH IFERYSLLKWRISNILDTEIINGE HHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MQEIQGFIEDILFKNDENGYVVAKIRKKKELITIVGCMPYITEGQNLKLKGEWVIHPQFG CHHHHHHHHHHHEECCCCCEEEEEEECCCCEEEEEECCHHHCCCCCEEEEEEEEEECCCC NQFKVEVCEEIVPDTVAGIERYLSSGIISGIGPVTAKKIVKKFGEETLNILDSNIERLTE CEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEGIGKKKIEVIYDSYIKQNEVRNIMMFFQNYGVTPNQCMKVYKRFGENSISIVKENPYI HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCEE LTEEIRGIGFKTADKIARSLGIASNSPFRIQSGINYIINGFCSLGNTYMPLEKLVSEAMD EEHHHCCCCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHH ILGVREEEIHENIYNNIAENKLKIEKVKEQSCVFTLPYYYCELGVTKKILSLSLSQYDNL HHCCCHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEHHHHHHHCHHHHHHHHHHHHCCCC NINIEDEIVSFEKNNNIKFHDSQREAIKGALENGVEIITGGPGTGKTTIINCITEIFEKA CEEEHHHEEEEECCCCEEEECCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC NMKVYMAAPTGRAAKRMSETTGREAKTIHRMLEMGVSEDDTEEVFSKGEETPLECDVVII CCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEE DEASMIDIILMNTLLKAIALGTRIIIVGDVDQLPSVGPGNVLRDLIESKCVKVVRLKEIF CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH RQSKESMIIVNAHRINDGEMPIINKKDKDFYFIECSEPKKIVNTLLELSNRRLPKFNKSW HCCCCCEEEEEEEECCCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCH HKIHDIQILSPMRKGVLGVSSLNKELQSVLNPKNDSKKEMEFKDYIFRVGDKVMQTKNNY HHHHHHHHHHHHHHCHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC SLKWTRASGEGEAEGLGIFNGDVGYIEDIDEEKETIQVLFDNERRVIYENLYLDEIDLAY EEEEEECCCCCCCCCEEEECCCCCCHHCCCCHHHEEEEEECCCCEEEEEEEEEECCCEEE AVTIHKSQGSEFPVVIMPAFKGPPLLMNRNLLYTGITRAKRLVVLVGSLKSINFMVQNDK EEEEECCCCCCCCEEEEECCCCCCEEECCCEEEECHHHHHEEEEEEECCCEEEEEEECCH IFERYSLLKWRISNILDTEIINGE HHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]