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The map label for this gene is prfA [H]

Identifier: 226947362

GI number: 226947362

Start: 170319

End: 171395

Strand: Direct

Name: prfA [H]

Synonym: CLM_0182

Alternate gene names: 226947362

Gene position: 170319-171395 (Clockwise)

Preceding gene: 226947361

Following gene: 226947363

Centisome position: 4.1

GC content: 31.57

Gene sequence:

>1077_bases
ATGTTAGAAAGACTTAATTTTATAGAAAATAAATATGAAGAACTATCAAATAAAATAAGCGACCCTTCAGTTATGGCAAA
TCAAAAAGAATGGCAAAAACTTTGTAAAGAGCATGCTGATTTAGAAATTATAGTTAATACATATAGAGAGTATAAAAAGG
CACAAGAGGATTTAGAATCAGATAAAGAAATGCTAAAGGAAGAATCAGACAAAGAACTAAGAGAAATGGCACAGGAAGAA
ATAAAAGAGTTAACTTTAAGATTAGAAGATTTAGAAAGGGAATTAACTATATTATTACTACCGAAAGATCCTAATGATGA
TAAGGATGTATTTATAGAAATTAGAGCAGGTGCTGGTGGAGAAGAAGCGGCTTTATTTGCTTCTAACTTATTAAGAATGT
ATACAAGATACGCAGAAAGAAAAAATTGGAAGGTAGAAACTATGAGTTTAAATGCTACAGATATAGGCGGATTTAAAGAA
GTTACTGTAGCAATTAAAGGAAAGGGAGCTTATAGTAGATTAAAATATGAAAGTGGAGTTCACAGAGTTCAAAGGGTTCC
AGATACAGAATCAAGCGGTAGAATTCACACTTCTACAGCTACTGTAGCAGTACTTCCTGAAGTAGATGATGTAGATATAA
ATATAAATGCTAATGACTTAAGAATTGATGTTTATAGAGCGTCAGGACATGGTGGACAGTGTGTAAATACTACAGATTCT
GCTGTAAGAATAACTCACTTACCAACAGGTCTTGTAGTTACATGTCAGGATGAAAAATCACAATTAAAAAATAAAGAAAA
AGCAATGAAGGTTTTAAAAGCTAGATTGTTTGAAGCTGCAGAGGCTGAAAGAGCAGCATCTATAGCAGAAGATAGAAAAA
GCCAAGTTGGGACTGGAGATAGAAGTGAAAGAATAAGAACTTATAACTATCCTCAAGGAAGAATTACAGATCATAGAATA
GGTTTAACATTATATAAATTAGAAACTTTTTTAGATGGAGATATAGATGAAGTTATAGAAGCTTTAGTAACAGAAGATCA
AGCGGAAAAAATGAAAGATTTAGGTAGAGTTAATTAA

Upstream 100 bases:

>100_bases
AAAAGCTAGAAAGTATTAAAATTCACAGGTTAGTTGTAAATGCTTTATAAAGTATGATATAATATAAAATTGTGAAAATA
TATATACGGAGTGAGAAATA

Downstream 100 bases:

>100_bases
TATTAATTAAGGAAAGAAGAGGTAATTATGGATTTAAACAAAGGCCGTAGAAATCAAAAGAGATCTTATGAAAGATTTGT
TGTGATTATGAGCTTTATTT

Product: peptide chain release factor 1

Products: NA

Alternate protein names: RF-1 [H]

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLESDKEMLKEESDKELREMAQEE
IKELTLRLEDLERELTILLLPKDPNDDKDVFIEIRAGAGGEEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKE
VTVAIKGKGAYSRLKYESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVNTTDS
AVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQVGTGDRSERIRTYNYPQGRITDHRI
GLTLYKLETFLDGDIDEVIEALVTEDQAEKMKDLGRVN

Sequences:

>Translated_358_residues
MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLESDKEMLKEESDKELREMAQEE
IKELTLRLEDLERELTILLLPKDPNDDKDVFIEIRAGAGGEEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKE
VTVAIKGKGAYSRLKYESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVNTTDS
AVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQVGTGDRSERIRTYNYPQGRITDHRI
GLTLYKLETFLDGDIDEVIEALVTEDQAEKMKDLGRVN
>Mature_358_residues
MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLESDKEMLKEESDKELREMAQEE
IKELTLRLEDLERELTILLLPKDPNDDKDVFIEIRAGAGGEEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKE
VTVAIKGKGAYSRLKYESGVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVNTTDS
AVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQVGTGDRSERIRTYNYPQGRITDHRI
GLTLYKLETFLDGDIDEVIEALVTEDQAEKMKDLGRVN

Specific function: Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA [H]

COG id: COG0216

COG function: function code J; Protein chain release factor A

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic/mitochondrial release factor family [H]

Homologues:

Organism=Homo sapiens, GI166795303, Length=284, Percent_Identity=48.5915492957746, Blast_Score=289, Evalue=3e-78,
Organism=Homo sapiens, GI34577120, Length=341, Percent_Identity=41.0557184750733, Blast_Score=257, Evalue=9e-69,
Organism=Homo sapiens, GI166795305, Length=189, Percent_Identity=47.0899470899471, Blast_Score=193, Evalue=2e-49,
Organism=Escherichia coli, GI1787462, Length=355, Percent_Identity=51.2676056338028, Blast_Score=369, Evalue=1e-103,
Organism=Escherichia coli, GI2367172, Length=334, Percent_Identity=41.6167664670659, Blast_Score=234, Evalue=5e-63,
Organism=Caenorhabditis elegans, GI17542784, Length=286, Percent_Identity=37.7622377622378, Blast_Score=196, Evalue=2e-50,
Organism=Saccharomyces cerevisiae, GI6321295, Length=329, Percent_Identity=46.5045592705167, Blast_Score=278, Evalue=7e-76,
Organism=Drosophila melanogaster, GI19921226, Length=340, Percent_Identity=44.1176470588235, Blast_Score=256, Evalue=1e-68,

Paralogues:

None

Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005139
- InterPro:   IPR000352
- InterPro:   IPR004373 [H]

Pfam domain/function: PF03462 PCRF; PF00472 RF-1 [H]

EC number: NA

Molecular weight: Translated: 40687; Mature: 40687

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS00745 RF_PROK_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES
CCCHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHH
DKEMLKEESDKELREMAQEEIKELTLRLEDLERELTILLLPKDPNDDKDVFIEIRAGAGG
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCC
EEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAIKGKGAYSRLKYESGV
CHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHH
HRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVNTTDS
HHHHCCCCCCCCCEEEECCEEEEEECCCCCEEEEECCCEEEEEEEEECCCCCCEECCCCC
AVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQVGTGD
EEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RSERIRTYNYPQGRITDHRIGLTLYKLETFLDGDIDEVIEALVTEDQAEKMKDLGRVN
CCCCCEECCCCCCCCCCCCCCEEEEEHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCC
>Mature Secondary Structure
MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES
CCCHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHH
DKEMLKEESDKELREMAQEEIKELTLRLEDLERELTILLLPKDPNDDKDVFIEIRAGAGG
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCC
EEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAIKGKGAYSRLKYESGV
CHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHH
HRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVNTTDS
HHHHCCCCCCCCCEEEECCEEEEEECCCCCEEEEECCCEEEEEEEEECCCCCCEECCCCC
AVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQVGTGD
EEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RSERIRTYNYPQGRITDHRIGLTLYKLETFLDGDIDEVIEALVTEDQAEKMKDLGRVN
CCCCCEECCCCCCCCCCCCCCEEEEEHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA