| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is nrdD [H]
Identifier: 226947317
GI number: 226947317
Start: 116913
End: 119054
Strand: Direct
Name: nrdD [H]
Synonym: CLM_0137
Alternate gene names: 226947317
Gene position: 116913-119054 (Clockwise)
Preceding gene: 226947316
Following gene: 226947318
Centisome position: 2.81
GC content: 29.65
Gene sequence:
>2142_bases ATGCTATATGTTGTGAAAAGAGACGGTAGAAAAGTAGAAATTGATGTTGTTAAAATATCAAATGCTATTAAAGGTGCAGC AGAAGAAATTGCTTTTGATATGAAGGAAAGTGAAAATATAAGTCTAACTCAAAAGGTTATAAAAAAGATAGAAGATTCTA ATAAAGAGGAAATATCAGTAGAAGATATACAAAATTTAGTTGAGCATGTTTTAATTGATAGCGGATTTAAAGAAATAGGG TATGCCTATTCAAATTATAGAAGAGAGAGAACAAAAATAAGAGAAATAAAATCTGAATTGATGACAGCTATAGAAAAAAT AGGGGTAGAAACAGATAGAGATAACGCGAATGTAGGTAATAATTTCAGCTCTAAATTATTAAGAATAGCTAGTGAATCTA ACAAATGGTATAATTTAGGGGTTATGCCAAAGCATTTAGCTAAATTACATGAAAATGGAGATATATATTATCATGATTTA GATAGTTACAATTTAACAGTAAATTGTTTAAATATAGATACAGGGCGAATATTACAAAGAGGATTCAATACGGGTTACGG TACAATTAATGCTCCAAAGAGAATTGAAAGTGCTGCAGAGTTAAGTTGTATATTACTTCAATCTACTCAAAATGATATGT TTGGAGGTCAAGCACACGTAAATTTTGATAATGATATGGCTTTATTTATTCCTAATACTAGATCTGAAATAAGAAAAGAA ATATTAGAAAATTTAAAGGGATTAGAGGTACAAGAAGAAGTTTTAAATAAAGAAAAAATTGATGAATTAGTAGAAGAACG ATTAAGACTACGCATACATCAAGCTATGCAAGGAATAGTCTATAATTTAAATACTATGCATTCTAGAGCAGGATCACAAG TACCTTTTAGTTCTATAAATATAGGAATACCTAAAAATAAAGATGCGGCTTTAATATGTGAAATATTTTTAAAAGAGTAT GAAAAAGGATTAGGAAAAGGTGAACAGCCAATATTCCCTAATATAATATTTAGAGTAAAAGAGGGAGTAAATAGAGAAGA GAAGGATCCTTACTACTATTTATTTAAATTAGCTGCTAAAATAGCAGGTAAGAGAATGAACCCTACTTTTATGAATATGG ATTCAGACTTTAACAAAGAATATTATGATAAAGGAATAATACCAGCTACTATGGGATGCAGAACTTATGTATGTTCAAAT ATAAGTGGTGAAGAAGGACCAGCCGGTAGAGGAAATATAGCTCCAACTACTATAAACCTTCCTAGGGTTGGAATATTAGC TAAAAAGGATATAAATAAATTTTTTAATTTACTAGATAATAGATTAGAACTAGCAAGAGAATCTTTATTGCATAGATATA ATGTACTAAAAAAATTAAGAGTTAAAGATTTACCTTTTGTTGTAGGAGAAGGCCTTATGAAGGGTTCAGAAAATTTATTA CCGGATGATTCTATTGAGCCTATTTTAAAACAAGGGTCTTGGGCTATAGGGTTCATAGGTATAGCAGAAACTTTGACAGC CCTTATAGGAAGTCATCACGGGGAAACAGAAGAGGCTAAAGAATTAGGGGTAAAAATAGTTTCTCATATAAGAGATTTCT GTGACAAATATAAAGAAATAGATAAATTAAATTGGAGTTGCTATGCCACACCTGCAGAGGGATTAAGTGGTAAGTTTATT CTTCAAGATAAAAAAGTTTTTGGAGAAATAAAAGGTGTTACAGATAAGAACTACTATACTAATAGTTATCATATACCAGT AGGTTTTCCAATATCAATTAAGGAAAAGATAAATATAGAGGCTCCTTATCATAAAATATGTAATGGCGGACATATAAGTT ATATCGAGTTAGATGATTATCCATCAGAAGAGGTAATTATGGATATAATCCAATATGCATATAGAAATACTAACATATCT TATATGGGGATAAATTTCCATATAAAATATTGTAGAGAATGTGGAACATATCTTGGAGTAGAGGAAGAAGCTTGTAATAA TTGTGGAAGTACAAATATACAAGGAATATCTAGAGTAACAGGATATTTAAGCTTAGATGAGAGATTTGGTTCTGGTAAAG TAGCAGAAAGAGCTGATAGGACATCAAATAATTCTAGTCATAGAAAAATTTATAATGCATAA
Upstream 100 bases:
>100_bases CGGTATATTTATTTAAATATAAAATTGCTGAAAAAAATTTAAGATAGTATAATGTTCAAAGTACATATACACAATATGTT GTAGGTAGGAGGAATATAGT
Downstream 100 bases:
>100_bases ATTGAGGTGTTTGGCTATGGAGAATAAATATTTACAAGTAGCAGGCTTTTTAGATAATTCCTTAGTTAATGGATTAGGAC TAAGGTCAGTAGTATTTGTA
Product: anaerobic ribonucleoside triphosphate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 713; Mature: 713
Protein sequence:
>713_residues MLYVVKRDGRKVEIDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISVEDIQNLVEHVLIDSGFKEIG YAYSNYRRERTKIREIKSELMTAIEKIGVETDRDNANVGNNFSSKLLRIASESNKWYNLGVMPKHLAKLHENGDIYYHDL DSYNLTVNCLNIDTGRILQRGFNTGYGTINAPKRIESAAELSCILLQSTQNDMFGGQAHVNFDNDMALFIPNTRSEIRKE ILENLKGLEVQEEVLNKEKIDELVEERLRLRIHQAMQGIVYNLNTMHSRAGSQVPFSSINIGIPKNKDAALICEIFLKEY EKGLGKGEQPIFPNIIFRVKEGVNREEKDPYYYLFKLAAKIAGKRMNPTFMNMDSDFNKEYYDKGIIPATMGCRTYVCSN ISGEEGPAGRGNIAPTTINLPRVGILAKKDINKFFNLLDNRLELARESLLHRYNVLKKLRVKDLPFVVGEGLMKGSENLL PDDSIEPILKQGSWAIGFIGIAETLTALIGSHHGETEEAKELGVKIVSHIRDFCDKYKEIDKLNWSCYATPAEGLSGKFI LQDKKVFGEIKGVTDKNYYTNSYHIPVGFPISIKEKINIEAPYHKICNGGHISYIELDDYPSEEVIMDIIQYAYRNTNIS YMGINFHIKYCRECGTYLGVEEEACNNCGSTNIQGISRVTGYLSLDERFGSGKVAERADRTSNNSSHRKIYNA
Sequences:
>Translated_713_residues MLYVVKRDGRKVEIDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISVEDIQNLVEHVLIDSGFKEIG YAYSNYRRERTKIREIKSELMTAIEKIGVETDRDNANVGNNFSSKLLRIASESNKWYNLGVMPKHLAKLHENGDIYYHDL DSYNLTVNCLNIDTGRILQRGFNTGYGTINAPKRIESAAELSCILLQSTQNDMFGGQAHVNFDNDMALFIPNTRSEIRKE ILENLKGLEVQEEVLNKEKIDELVEERLRLRIHQAMQGIVYNLNTMHSRAGSQVPFSSINIGIPKNKDAALICEIFLKEY EKGLGKGEQPIFPNIIFRVKEGVNREEKDPYYYLFKLAAKIAGKRMNPTFMNMDSDFNKEYYDKGIIPATMGCRTYVCSN ISGEEGPAGRGNIAPTTINLPRVGILAKKDINKFFNLLDNRLELARESLLHRYNVLKKLRVKDLPFVVGEGLMKGSENLL PDDSIEPILKQGSWAIGFIGIAETLTALIGSHHGETEEAKELGVKIVSHIRDFCDKYKEIDKLNWSCYATPAEGLSGKFI LQDKKVFGEIKGVTDKNYYTNSYHIPVGFPISIKEKINIEAPYHKICNGGHISYIELDDYPSEEVIMDIIQYAYRNTNIS YMGINFHIKYCRECGTYLGVEEEACNNCGSTNIQGISRVTGYLSLDERFGSGKVAERADRTSNNSSHRKIYNA >Mature_713_residues MLYVVKRDGRKVEIDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISVEDIQNLVEHVLIDSGFKEIG YAYSNYRRERTKIREIKSELMTAIEKIGVETDRDNANVGNNFSSKLLRIASESNKWYNLGVMPKHLAKLHENGDIYYHDL DSYNLTVNCLNIDTGRILQRGFNTGYGTINAPKRIESAAELSCILLQSTQNDMFGGQAHVNFDNDMALFIPNTRSEIRKE ILENLKGLEVQEEVLNKEKIDELVEERLRLRIHQAMQGIVYNLNTMHSRAGSQVPFSSINIGIPKNKDAALICEIFLKEY EKGLGKGEQPIFPNIIFRVKEGVNREEKDPYYYLFKLAAKIAGKRMNPTFMNMDSDFNKEYYDKGIIPATMGCRTYVCSN ISGEEGPAGRGNIAPTTINLPRVGILAKKDINKFFNLLDNRLELARESLLHRYNVLKKLRVKDLPFVVGEGLMKGSENLL PDDSIEPILKQGSWAIGFIGIAETLTALIGSHHGETEEAKELGVKIVSHIRDFCDKYKEIDKLNWSCYATPAEGLSGKFI LQDKKVFGEIKGVTDKNYYTNSYHIPVGFPISIKEKINIEAPYHKICNGGHISYIELDDYPSEEVIMDIIQYAYRNTNIS YMGINFHIKYCRECGTYLGVEEEACNNCGSTNIQGISRVTGYLSLDERFGSGKVAERADRTSNNSSHRKIYNA
Specific function: Unknown
COG id: COG1328
COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glycine radical domain [H]
Homologues:
Organism=Escherichia coli, GI1790686, Length=728, Percent_Identity=31.456043956044, Blast_Score=325, Evalue=7e-90,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR012833 [H]
Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 80721; Mature: 80721
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: PS51161 ATP_CONE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYVVKRDGRKVEIDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISV CEEEEECCCCEEEEEEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEH EDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMTAIEKIGVETDRDNANVGN HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NFSSKLLRIASESNKWYNLGVMPKHLAKLHENGDIYYHDLDSYNLTVNCLNIDTGRILQR CHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCEEEEECCCCEEEEEEEECCHHHHHHH GFNTGYGTINAPKRIESAAELSCILLQSTQNDMFGGQAHVNFDNDMALFIPNTRSEIRKE CCCCCCCCCCCCHHHHHHHHEEEEEEECCCCCCCCCEEEEECCCCEEEEECCCHHHHHHH ILENLKGLEVQEEVLNKEKIDELVEERLRLRIHQAMQGIVYNLNTMHSRAGSQVPFSSIN HHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE IGIPKNKDAALICEIFLKEYEKGLGKGEQPIFPNIIFRVKEGVNREEKDPYYYLFKLAAK ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH IAGKRMNPTFMNMDSDFNKEYYDKGIIPATMGCRTYVCSNISGEEGPAGRGNIAPTTINL HHCCCCCCEEECCCCCCCHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEECC PRVGILAKKDINKFFNLLDNRLELARESLLHRYNVLKKLRVKDLPFVVGEGLMKGSENLL CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC PDDSIEPILKQGSWAIGFIGIAETLTALIGSHHGETEEAKELGVKIVSHIRDFCDKYKEI CCCCHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DKLNWSCYATPAEGLSGKFILQDKKVFGEIKGVTDKNYYTNSYHIPVGFPISIKEKINIE HCCCCEEEECCCCCCCCEEEEECHHHHHHHCCCCCCCEECCEEEEECCCCEEECCCEECC APYHKICNGGHISYIELDDYPSEEVIMDIIQYAYRNTNISYMGINFHIKYCRECGTYLGV CCHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHCCC EEEACNNCGSTNIQGISRVTGYLSLDERFGSGKVAERADRTSNNSSHRKIYNA CHHHHCCCCCCCCCHHHHHHHHEEEHHHCCCCCHHHHHHCCCCCCCCCEECCC >Mature Secondary Structure MLYVVKRDGRKVEIDVVKISNAIKGAAEEIAFDMKESENISLTQKVIKKIEDSNKEEISV CEEEEECCCCEEEEEEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEH EDIQNLVEHVLIDSGFKEIGYAYSNYRRERTKIREIKSELMTAIEKIGVETDRDNANVGN HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NFSSKLLRIASESNKWYNLGVMPKHLAKLHENGDIYYHDLDSYNLTVNCLNIDTGRILQR CHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCEEEEECCCCEEEEEEEECCHHHHHHH GFNTGYGTINAPKRIESAAELSCILLQSTQNDMFGGQAHVNFDNDMALFIPNTRSEIRKE CCCCCCCCCCCCHHHHHHHHEEEEEEECCCCCCCCCEEEEECCCCEEEEECCCHHHHHHH ILENLKGLEVQEEVLNKEKIDELVEERLRLRIHQAMQGIVYNLNTMHSRAGSQVPFSSIN HHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE IGIPKNKDAALICEIFLKEYEKGLGKGEQPIFPNIIFRVKEGVNREEKDPYYYLFKLAAK ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH IAGKRMNPTFMNMDSDFNKEYYDKGIIPATMGCRTYVCSNISGEEGPAGRGNIAPTTINL HHCCCCCCEEECCCCCCCHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEECC PRVGILAKKDINKFFNLLDNRLELARESLLHRYNVLKKLRVKDLPFVVGEGLMKGSENLL CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC PDDSIEPILKQGSWAIGFIGIAETLTALIGSHHGETEEAKELGVKIVSHIRDFCDKYKEI CCCCHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DKLNWSCYATPAEGLSGKFILQDKKVFGEIKGVTDKNYYTNSYHIPVGFPISIKEKINIE HCCCCEEEECCCCCCCCEEEEECHHHHHHHCCCCCCCEECCEEEEECCCCEEECCCEECC APYHKICNGGHISYIELDDYPSEEVIMDIIQYAYRNTNISYMGINFHIKYCRECGTYLGV CCHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHCCC EEEACNNCGSTNIQGISRVTGYLSLDERFGSGKVAERADRTSNNSSHRKIYNA CHHHHCCCCCCCCCHHHHHHHHEEEHHHCCCCCHHHHHHCCCCCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]