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The map label for this gene is yfeT [C]

Identifier: 226225249

GI number: 226225249

Start: 2743861

End: 2744712

Strand: Direct

Name: yfeT [C]

Synonym: Lm4b_02671

Alternate gene names: 226225249

Gene position: 2743861-2744712 (Clockwise)

Preceding gene: 226225248

Following gene: 226225250

Centisome position: 94.2

GC content: 35.56

Gene sequence:

>852_bases
ATGAATATTTTAATTAAAATACGCGAACTAACCAATTTAACCAATAGTGAAAAAGAACTTGCGAATTATATTTTAGCGAA
CCCGAAAAAAACATTACAGTGCAAACCAAAAGAATTAGCTACTGCTGCCTTTGTCTCCGCTGCAACTATCTACCGTTTAA
TTAACAAACTAGGACTAAACGGAATCGGTGAACTGAAAATCGAAATTGCCTCGAGTCTCCGTGAAACAAATGAAGAAAAA
GATTTAAATTACGATTATCCTATTTTGGAATCCGATACACCCTACCAAATAATGACCAACCTAAACCAAATATACAAAGG
AACCATTGATGAAACATTAAACAACGCCGATCCAGAAGAACTTGTCAAAATTGGTGAAAAATTAATTCAAGCGAAAACCA
TTGATGTTTATGCAGCTTCCGCCAATTTATTTTTTGCTCAAAACTTCAAATTCCAAATGCAGGAAATCGGTGTTTTAGTC
AATGTTCCTGAAGAAGATTATATCCAAAGCTTATCGGCCGCCAACAGCGATGAAAATCATATTGCCATCGTCGTCTCTTA
CGGCGGTCGGAGTCGGACGCTTCAAAGAGTCGTCAAAATCTTGTCCGAAAACAATGTCGATATTATTTTAATTACATCTA
TGCAAGACAATCCTTTAGTCGAATTTGCCACACACAAAATCTACATGGCATCCGCTGAGAACCATTACAACAAAGTCTCT
TCGTTCTCAACGCGCCAATCTTTACTAAGCATTTTCGATACGCTTTATTCCATTTATTTTAATCAAAATTACGAAAAAAA
CATTCAATACAAAACGACTAATTACCAAAAAATGAACACCGAATTGGAATGA

Upstream 100 bases:

>100_bases
AAAAATCCCTTTAGATGCACTTTGTCTAGAGGGACTTTTTTATTTAATGGTATAATTATTTAAAACAATTTCCCATTCTA
AAAAGTTAGGATTTGAAACG

Downstream 100 bases:

>100_bases
TTTTTCAAAAACACAGCCATTTTCCTTTCGAATTGAAAAAAAGCTCTCAATATGCGCCACATCTGATTTTTTCTTAATTT
CTAGTGATACAATAAAGAAA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MNILIKIRELTNLTNSEKELANYILANPKKTLQCKPKELATAAFVSAATIYRLINKLGLNGIGELKIEIASSLRETNEEK
DLNYDYPILESDTPYQIMTNLNQIYKGTIDETLNNADPEELVKIGEKLIQAKTIDVYAASANLFFAQNFKFQMQEIGVLV
NVPEEDYIQSLSAANSDENHIAIVVSYGGRSRTLQRVVKILSENNVDIILITSMQDNPLVEFATHKIYMASAENHYNKVS
SFSTRQSLLSIFDTLYSIYFNQNYEKNIQYKTTNYQKMNTELE

Sequences:

>Translated_283_residues
MNILIKIRELTNLTNSEKELANYILANPKKTLQCKPKELATAAFVSAATIYRLINKLGLNGIGELKIEIASSLRETNEEK
DLNYDYPILESDTPYQIMTNLNQIYKGTIDETLNNADPEELVKIGEKLIQAKTIDVYAASANLFFAQNFKFQMQEIGVLV
NVPEEDYIQSLSAANSDENHIAIVVSYGGRSRTLQRVVKILSENNVDIILITSMQDNPLVEFATHKIYMASAENHYNKVS
SFSTRQSLLSIFDTLYSIYFNQNYEKNIQYKTTNYQKMNTELE
>Mature_283_residues
MNILIKIRELTNLTNSEKELANYILANPKKTLQCKPKELATAAFVSAATIYRLINKLGLNGIGELKIEIASSLRETNEEK
DLNYDYPILESDTPYQIMTNLNQIYKGTIDETLNNADPEELVKIGEKLIQAKTIDVYAASANLFFAQNFKFQMQEIGVLV
NVPEEDYIQSLSAANSDENHIAIVVSYGGRSRTLQRVVKILSENNVDIILITSMQDNPLVEFATHKIYMASAENHYNKVS
SFSTRQSLLSIFDTLYSIYFNQNYEKNIQYKTTNYQKMNTELE

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788767, Length=249, Percent_Identity=23.2931726907631, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082130, Length=271, Percent_Identity=25.4612546125461, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788159, Length=281, Percent_Identity=23.1316725978648, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082369, Length=271, Percent_Identity=22.5092250922509, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 32225; Mature: 32225

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILIKIRELTNLTNSEKELANYILANPKKTLQCKPKELATAAFVSAATIYRLINKLGLN
CCEEEEEHHHHCCCCCHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCC
GIGELKIEIASSLRETNEEKDLNYDYPILESDTPYQIMTNLNQIYKGTIDETLNNADPEE
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCHHH
LVKIGEKLIQAKTIDVYAASANLFFAQNFKFQMQEIGVLVNVPEEDYIQSLSAANSDENH
HHHHHHHHHHHHEEEEEEECCEEEEEECCEEEHHHCCEEEECCCHHHHHHHHCCCCCCCE
IAIVVSYGGRSRTLQRVVKILSENNVDIILITSMQDNPLVEFATHKIYMASAENHYNKVS
EEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCEEEEECCHHHHHHHH
SFSTRQSLLSIFDTLYSIYFNQNYEKNIQYKTTNYQKMNTELE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEECCCCCC
>Mature Secondary Structure
MNILIKIRELTNLTNSEKELANYILANPKKTLQCKPKELATAAFVSAATIYRLINKLGLN
CCEEEEEHHHHCCCCCHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCC
GIGELKIEIASSLRETNEEKDLNYDYPILESDTPYQIMTNLNQIYKGTIDETLNNADPEE
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCHHH
LVKIGEKLIQAKTIDVYAASANLFFAQNFKFQMQEIGVLVNVPEEDYIQSLSAANSDENH
HHHHHHHHHHHHEEEEEEECCEEEEEECCEEEHHHCCEEEECCCHHHHHHHHCCCCCCCE
IAIVVSYGGRSRTLQRVVKILSENNVDIILITSMQDNPLVEFATHKIYMASAENHYNKVS
EEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCEEEEECCHHHHHHHH
SFSTRQSLLSIFDTLYSIYFNQNYEKNIQYKTTNYQKMNTELE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]