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The map label for this gene is 226225223

Identifier: 226225223

GI number: 226225223

Start: 2716251

End: 2717057

Strand: Reverse

Name: 226225223

Synonym: Lm4b_02645

Alternate gene names: NA

Gene position: 2717057-2716251 (Counterclockwise)

Preceding gene: 226225228

Following gene: 226225222

Centisome position: 93.28

GC content: 38.79

Gene sequence:

>807_bases
ATGGCAAAGCTAGAAACGTTTTATCCCATTGTAGCTACACCAAAGCGTGCTGGCTATAAAGAATATCTACCGAGTGCGGT
TCTTACAGGCTATATTCGCTGTTTTTGGGAGGCAGATGATAAGAATTTCCCGGGAAATAATTTAGTGGTTCCTGATTTAT
GTGCGGATATTATTTTTACAATTGATAGTAAAACAGGGCTAGTGACGGATGCTATATTTGTTGGCGTTAGTGATGCACCG
TTTGAGTCTGACGATGAAAGTAATACCGAGCTTTTTGCCGTGCGATTTTATGCGTGGTCGTTATTTTTATTTGTCGAACA
GGACTTGACTGGTAGCATGAATCGGGTAAAAGAGCCGGAAGAGATGTTTGCTGGATTTGTTTCGTTTTTTCAAGAGAGGT
TTGCTGAAATGACGACGAACATGGAAAGAATAGCTTTATTAGAAGAATTTTTACTGCGAAAATTAATGATGCTTGGCAAG
CAAGTCCATCCTGATTTTTTAAACGGTATTGATAAGTTACTACAAAATCCCAATCAACTTGCGTTAGGAGCTGTATCTGT
TCGGCAGTTAGAACGGCTATTTCAAAAACACATGGGACTTGCACCAAAACAGACAGCAAAACTTATTCGTTTCCAAAAAG
TATTACAGGCATTATATGAGAATCCAAGTGTGCCGGGCGCTGAGCTTGCTTATCTTCATGGTTTTACGGACCAGGCTCAC
TTAATTAAACAATTTAAACGATATAGTAATCACACCCCAGAAGAAATGAAGCAAATTTTTCTGCAAAATGTCGCAAATAT
ACAATGA

Upstream 100 bases:

>100_bases
CAAAAGTTTTCCCCTTAGTTACTTAATACCCATAAATAAAAGAAAGAAGCATGATTAAAGAGAAAATTTTGTGGTACTAT
GAGGAAAAGGAGGGCTCTTT

Downstream 100 bases:

>100_bases
AAAACGTAAATGCTTTGTTAAACTAACGATATGGAGGTGCTTAAAATGATTAATGAATTTGTTTGTACAAATATTTCCAC
GCAAGATCCGGCGGCGTTGG

Product: transcription regulator

Products: NA

Alternate protein names: Transcriptional Regulator; AraC Family Transcriptional Regulator; Regulatory Protein; Transcriptional Regulator Arac Family; AraC/XylS Family Transcriptional Regulator; Arac/Xyls Family Transcriptional Regulator; Helix-TurN-Helix Arac Domain; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcription Regulator

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MAKLETFYPIVATPKRAGYKEYLPSAVLTGYIRCFWEADDKNFPGNNLVVPDLCADIIFTIDSKTGLVTDAIFVGVSDAP
FESDDESNTELFAVRFYAWSLFLFVEQDLTGSMNRVKEPEEMFAGFVSFFQERFAEMTTNMERIALLEEFLLRKLMMLGK
QVHPDFLNGIDKLLQNPNQLALGAVSVRQLERLFQKHMGLAPKQTAKLIRFQKVLQALYENPSVPGAELAYLHGFTDQAH
LIKQFKRYSNHTPEEMKQIFLQNVANIQ

Sequences:

>Translated_268_residues
MAKLETFYPIVATPKRAGYKEYLPSAVLTGYIRCFWEADDKNFPGNNLVVPDLCADIIFTIDSKTGLVTDAIFVGVSDAP
FESDDESNTELFAVRFYAWSLFLFVEQDLTGSMNRVKEPEEMFAGFVSFFQERFAEMTTNMERIALLEEFLLRKLMMLGK
QVHPDFLNGIDKLLQNPNQLALGAVSVRQLERLFQKHMGLAPKQTAKLIRFQKVLQALYENPSVPGAELAYLHGFTDQAH
LIKQFKRYSNHTPEEMKQIFLQNVANIQ
>Mature_267_residues
AKLETFYPIVATPKRAGYKEYLPSAVLTGYIRCFWEADDKNFPGNNLVVPDLCADIIFTIDSKTGLVTDAIFVGVSDAPF
ESDDESNTELFAVRFYAWSLFLFVEQDLTGSMNRVKEPEEMFAGFVSFFQERFAEMTTNMERIALLEEFLLRKLMMLGKQ
VHPDFLNGIDKLLQNPNQLALGAVSVRQLERLFQKHMGLAPKQTAKLIRFQKVLQALYENPSVPGAELAYLHGFTDQAHL
IKQFKRYSNHTPEEMKQIFLQNVANIQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30651; Mature: 30519

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKLETFYPIVATPKRAGYKEYLPSAVLTGYIRCFWEADDKNFPGNNLVVPDLCADIIFT
CCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHH
IDSKTGLVTDAIFVGVSDAPFESDDESNTELFAVRFYAWSLFLFVEQDLTGSMNRVKEPE
CCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHCCCHHHCCCHH
EMFAGFVSFFQERFAEMTTNMERIALLEEFLLRKLMMLGKQVHPDFLNGIDKLLQNPNQL
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
ALGAVSVRQLERLFQKHMGLAPKQTAKLIRFQKVLQALYENPSVPGAELAYLHGFTDQAH
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHH
LIKQFKRYSNHTPEEMKQIFLQNVANIQ
HHHHHHHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA