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The map label for this gene is ybaF [H]

Identifier: 226225179

GI number: 226225179

Start: 2672923

End: 2673723

Strand: Reverse

Name: ybaF [H]

Synonym: Lm4b_02601

Alternate gene names: 226225179

Gene position: 2673723-2672923 (Counterclockwise)

Preceding gene: 226225180

Following gene: 226225178

Centisome position: 91.8

GC content: 40.07

Gene sequence:

>801_bases
ATGATTGAAAAACTAATATTAGGTCGTTTTGTCCCAGGGGAGTCCTTAATTCATGGTCTGGATGCGCGAACGAAACTTTT
AGCAGGCTTTTATTATATCGGCATTTTATTTTTAGCGAATAACTGGTGGACATACGCCTTAATGGTGTTGTTCACACTCA
TGGTCATTCAAATGACAGGTATCAAGTTAAAAGTGTTTATAAAAGGTGTAAAACCACTTATTTGGCTAATTTTATTTACC
GTAGTAATGCAAATACTATTTGCGAGTGGCGGAACGATTTATTTTGATTGGGGTCCATTTACGATCTCTTCATTTGGGCT
TTTGAACGGGGTATTTGTGTTTTTGCGCTTTGTCTTAATTATCATGATGTCGACCGTTATCACGCTCACAACGACGCCTA
TGAACCTAACAGACGCAATTGCTTACATCCTTCGTCCGTTTGCTGTACTCAAAGTGCCGGTGAATGACATTGCATTAATG
ATTTCAGTGGCACTTCGCTTTATTCCAACTCTTATGGGAGAAACAGATAAAATTATGAAAGCGCAGCGAGCTCGCGGAGT
GGATTTTGGTGAAGGTAATCTTTTCGAACAAATGAAAGTTGTTGTCCCGATTTTTATTCCGTTATTTGTTAGTTCGTTTA
ACCGAGCGGAAGAATTAGCGGATGCAATGGAAGCGAGAGGGTATCAAGGAGGCGAAGGGCGCACGAGATTCCGAATATTG
CATTGGCATTTTGGAGATTTGATTGCGGCATGTGTAATGATACTTTTAACCGCGGGACTCGTAATACTAAGAACATCTTA
A

Upstream 100 bases:

>100_bases
GTATTCGTAATTTCGTATTAATTAATGCGACATTGACAATTTTAATGGCGGTGAGCGTGGTACTTCAACAACTGGCGTAA
AGAAAAGGGGGCTTCTTTGA

Downstream 100 bases:

>100_bases
AAACATTCGATATTAACGGATGTTTTTTTCTTTTGGATAAAATGAGCAGAATGGCTCTGTCAGACAGTTTGAAGATAAAC
CAAAACCGAGAATCTTCTAT

Product: Cobalt transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MIEKLILGRFVPGESLIHGLDARTKLLAGFYYIGILFLANNWWTYALMVLFTLMVIQMTGIKLKVFIKGVKPLIWLILFT
VVMQILFASGGTIYFDWGPFTISSFGLLNGVFVFLRFVLIIMMSTVITLTTTPMNLTDAIAYILRPFAVLKVPVNDIALM
ISVALRFIPTLMGETDKIMKAQRARGVDFGEGNLFEQMKVVVPIFIPLFVSSFNRAEELADAMEARGYQGGEGRTRFRIL
HWHFGDLIAACVMILLTAGLVILRTS

Sequences:

>Translated_266_residues
MIEKLILGRFVPGESLIHGLDARTKLLAGFYYIGILFLANNWWTYALMVLFTLMVIQMTGIKLKVFIKGVKPLIWLILFT
VVMQILFASGGTIYFDWGPFTISSFGLLNGVFVFLRFVLIIMMSTVITLTTTPMNLTDAIAYILRPFAVLKVPVNDIALM
ISVALRFIPTLMGETDKIMKAQRARGVDFGEGNLFEQMKVVVPIFIPLFVSSFNRAEELADAMEARGYQGGEGRTRFRIL
HWHFGDLIAACVMILLTAGLVILRTS
>Mature_266_residues
MIEKLILGRFVPGESLIHGLDARTKLLAGFYYIGILFLANNWWTYALMVLFTLMVIQMTGIKLKVFIKGVKPLIWLILFT
VVMQILFASGGTIYFDWGPFTISSFGLLNGVFVFLRFVLIIMMSTVITLTTTPMNLTDAIAYILRPFAVLKVPVNDIALM
ISVALRFIPTLMGETDKIMKAQRARGVDFGEGNLFEQMKVVVPIFIPLFVSSFNRAEELADAMEARGYQGGEGRTRFRIL
HWHFGDLIAACVMILLTAGLVILRTS

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 29859; Mature: 29859

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEKLILGRFVPGESLIHGLDARTKLLAGFYYIGILFLANNWWTYALMVLFTLMVIQMTG
CCCHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
IKLKVFIKGVKPLIWLILFTVVMQILFASGGTIYFDWGPFTISSFGLLNGVFVFLRFVLI
CEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
IMMSTVITLTTTPMNLTDAIAYILRPFAVLKVPVNDIALMISVALRFIPTLMGETDKIMK
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHCCHHHHHH
AQRARGVDFGEGNLFEQMKVVVPIFIPLFVSSFNRAEELADAMEARGYQGGEGRTRFRIL
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
HWHFGDLIAACVMILLTAGLVILRTS
EEHHHHHHHHHHHHHHHCCHHEEECC
>Mature Secondary Structure
MIEKLILGRFVPGESLIHGLDARTKLLAGFYYIGILFLANNWWTYALMVLFTLMVIQMTG
CCCHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
IKLKVFIKGVKPLIWLILFTVVMQILFASGGTIYFDWGPFTISSFGLLNGVFVFLRFVLI
CEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
IMMSTVITLTTTPMNLTDAIAYILRPFAVLKVPVNDIALMISVALRFIPTLMGETDKIMK
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHCCHHHHHH
AQRARGVDFGEGNLFEQMKVVVPIFIPLFVSSFNRAEELADAMEARGYQGGEGRTRFRIL
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
HWHFGDLIAACVMILLTAGLVILRTS
EEHHHHHHHHHHHHHHHCCHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]