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The map label for this gene is xynC [H]

Identifier: 226224980

GI number: 226224980

Start: 2473086

End: 2473811

Strand: Direct

Name: xynC [H]

Synonym: Lm4b_02401

Alternate gene names: 226224980

Gene position: 2473086-2473811 (Clockwise)

Preceding gene: 226224979

Following gene: 226224982

Centisome position: 84.91

GC content: 40.63

Gene sequence:

>726_bases
TTGTTTAGCTATGCAAACAAGTGTAACGGTGATTTGCCCGAAACAGATGCACTTTATCATGGCTCAATTCCGAAATATAA
AACATTATATATTCTTCACGGTTTGTCGAATAACCACACTACTTATGTACGCAATACAAATATCGAACGCTATGCCACTG
AAAAAGGGCTCGCTGTTGTCATGCCCGCAGCAGATCATAGCTTTTATTCTAACATGGTTCATGGTCGCGACTTTTTTGAG
TTTGTTAGTACGGAACTGCCGCACGTTATGAAAAACTGGTTCCCACTTTCAGATAAAAAAGAAGATACTTTTATAGCTGG
TCATTCCATGGGAGGTTACGGTGCGTTCAAGGTTGCACTTACTTTTCCAGAAAAATTCCAAGCCGCGGCCAGTATGTCCG
GCGTCATGGATATTAATTATATCATTAAAGAAGACTGCTTCGAAAATTTCAGCACGCGTGCCATCACGGGTGAAATGGCT
AGCCAAACTGGTACGGAAAATGATTTATTTCATTTATTAGAAACTAATCTCCAAAACCAAGTGCCATTACCAGCCCTTTT
CCAAAATTGTGGCACGGAAGATTTTCTATATGAAGATAATCTTCGTTTCCGAGATTTTGCGCTTGAGAAAAATGCTCCGC
TAGAGTATCGCGAAGGCCCCGGTGACCATGATTGGGATTTTTGGGATAAGAGTATCAAAGAAATTATCGACTGGCTTCCA
CTTTAA

Upstream 100 bases:

>100_bases
TTATATTTATTTTATTTCGCTCAAAATCATGTATACTAGAAAAAAAGACACGTCAGGAGGCCCCTACATTGGCTATTTTA
GAACTTAATTTCAAATCAGT

Downstream 100 bases:

>100_bases
TAAAAAGAAGACTCGGACTCACCATCCAAGTCTTCTTTTTTAGTGCGTAAATCCGTATGAGTCGTTGCGTTCTTTGTCAT
GATACAGCACTCTAGCATGT

Product: acetylesterase

Products: NA

Alternate protein names: Acetylxylosidase [H]

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MFSYANKCNGDLPETDALYHGSIPKYKTLYILHGLSNNHTTYVRNTNIERYATEKGLAVVMPAADHSFYSNMVHGRDFFE
FVSTELPHVMKNWFPLSDKKEDTFIAGHSMGGYGAFKVALTFPEKFQAAASMSGVMDINYIIKEDCFENFSTRAITGEMA
SQTGTENDLFHLLETNLQNQVPLPALFQNCGTEDFLYEDNLRFRDFALEKNAPLEYREGPGDHDWDFWDKSIKEIIDWLP
L

Sequences:

>Translated_241_residues
MFSYANKCNGDLPETDALYHGSIPKYKTLYILHGLSNNHTTYVRNTNIERYATEKGLAVVMPAADHSFYSNMVHGRDFFE
FVSTELPHVMKNWFPLSDKKEDTFIAGHSMGGYGAFKVALTFPEKFQAAASMSGVMDINYIIKEDCFENFSTRAITGEMA
SQTGTENDLFHLLETNLQNQVPLPALFQNCGTEDFLYEDNLRFRDFALEKNAPLEYREGPGDHDWDFWDKSIKEIIDWLP
L
>Mature_241_residues
MFSYANKCNGDLPETDALYHGSIPKYKTLYILHGLSNNHTTYVRNTNIERYATEKGLAVVMPAADHSFYSNMVHGRDFFE
FVSTELPHVMKNWFPLSDKKEDTFIAGHSMGGYGAFKVALTFPEKFQAAASMSGVMDINYIIKEDCFENFSTRAITGEMA
SQTGTENDLFHLLETNLQNQVPLPALFQNCGTEDFLYEDNLRFRDFALEKNAPLEYREGPGDHDWDFWDKSIKEIIDWLP
L

Specific function: Unknown

COG id: COG0627

COG function: function code R; Predicted esterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000801 [H]

Pfam domain/function: PF00756 Esterase [H]

EC number: NA

Molecular weight: Translated: 27601; Mature: 27601

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSYANKCNGDLPETDALYHGSIPKYKTLYILHGLSNNHTTYVRNTNIERYATEKGLAVV
CCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCEEEEECCCCHHHHCCCCCEEE
MPAADHSFYSNMVHGRDFFEFVSTELPHVMKNWFPLSDKKEDTFIAGHSMGGYGAFKVAL
EECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEEEEE
TFPEKFQAAASMSGVMDINYIIKEDCFENFSTRAITGEMASQTGTENDLFHLLETNLQNQ
ECCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCCHHHHHHHHHCCCCC
VPLPALFQNCGTEDFLYEDNLRFRDFALEKNAPLEYREGPGDHDWDFWDKSIKEIIDWLP
CCHHHHHHHCCCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
L
C
>Mature Secondary Structure
MFSYANKCNGDLPETDALYHGSIPKYKTLYILHGLSNNHTTYVRNTNIERYATEKGLAVV
CCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCEEEEECCCCHHHHCCCCCEEE
MPAADHSFYSNMVHGRDFFEFVSTELPHVMKNWFPLSDKKEDTFIAGHSMGGYGAFKVAL
EECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEEEEE
TFPEKFQAAASMSGVMDINYIIKEDCFENFSTRAITGEMASQTGTENDLFHLLETNLQNQ
ECCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCCHHHHHHHHHCCCCC
VPLPALFQNCGTEDFLYEDNLRFRDFALEKNAPLEYREGPGDHDWDFWDKSIKEIIDWLP
CCHHHHHHHCCCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2111111 [H]