| Definition | Listeria monocytogenes Clip81459, complete genome. |
|---|---|
| Accession | NC_012488 |
| Length | 2,912,690 |
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The map label for this gene is yfjM [H]
Identifier: 226224579
GI number: 226224579
Start: 2041555
End: 2042040
Strand: Reverse
Name: yfjM [H]
Synonym: Lm4b_01993
Alternate gene names: 226224579
Gene position: 2042040-2041555 (Counterclockwise)
Preceding gene: 226224580
Following gene: 226224575
Centisome position: 70.11
GC content: 39.51
Gene sequence:
>486_bases GTGGGAATATCCAATAAAACGAACCTGATTATTATTGCATCTGGAAAACCAAAAATATGGGATAAGTCGCCAGATATTGG TCCAGTAAAAGCAAGCGAAGTGTATACAGGAACATTTCATCGTTTAAGTAGAGCCTATGCGGAACAGTTTGCAAATGAAT ATTTAATATTATCCCCCAAATATGGTTTTTTGCGACCGGACGATATTATTTCAAAAACATATGATGTCCGCTTCACCATG AAAGGGACTAGTGCTGATACGATTCAACTCGAGGAATTAAAGGAGCAGTGGCAGAAACTACAAATAAACCCTACCGAACC AATTCCGATGTTAGGCGGCAAAAAGTTCAGAGGGTTATTGACGAGCATCACGGATGGTAAGCAAGTATTTAATTTCCCAC TTGACGGGGCATCAGGAATTGGTGTCATGCAGCGAAATTTAAAGCAAGCTATCGAAACAGGAATTCCATTAAATCGTACT GAGTAA
Upstream 100 bases:
>100_bases GCTACGAGCAGAACATGGCATCCATACAAGTACTAAAACACAACCATTTCGTACATATCAAAGAAAAAGATACAGAAGAG AAACAAGGAAGAGTGATGAT
Downstream 100 bases:
>100_bases AAGAAGTGCAGCAGTTATGAGCAAAAACATAACGCCCATATTAACATTTTTACGGATGAAGAAATAAATCGTTTGTAACG CCATCAAAATAGCGAGTGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MGISNKTNLIIIASGKPKIWDKSPDIGPVKASEVYTGTFHRLSRAYAEQFANEYLILSPKYGFLRPDDIISKTYDVRFTM KGTSADTIQLEELKEQWQKLQINPTEPIPMLGGKKFRGLLTSITDGKQVFNFPLDGASGIGVMQRNLKQAIETGIPLNRT E
Sequences:
>Translated_161_residues MGISNKTNLIIIASGKPKIWDKSPDIGPVKASEVYTGTFHRLSRAYAEQFANEYLILSPKYGFLRPDDIISKTYDVRFTM KGTSADTIQLEELKEQWQKLQINPTEPIPMLGGKKFRGLLTSITDGKQVFNFPLDGASGIGVMQRNLKQAIETGIPLNRT E >Mature_160_residues GISNKTNLIIIASGKPKIWDKSPDIGPVKASEVYTGTFHRLSRAYAEQFANEYLILSPKYGFLRPDDIISKTYDVRFTMK GTSADTIQLEELKEQWQKLQINPTEPIPMLGGKKFRGLLTSITDGKQVFNFPLDGASGIGVMQRNLKQAIETGIPLNRTE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18006; Mature: 17875
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGISNKTNLIIIASGKPKIWDKSPDIGPVKASEVYTGTFHRLSRAYAEQFANEYLILSPK CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCEEEECCC YGFLRPDDIISKTYDVRFTMKGTSADTIQLEELKEQWQKLQINPTEPIPMLGGKKFRGLL CCCCCCHHHHCCEEEEEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH TSITDGKQVFNFPLDGASGIGVMQRNLKQAIETGIPLNRTE HHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure GISNKTNLIIIASGKPKIWDKSPDIGPVKASEVYTGTFHRLSRAYAEQFANEYLILSPK CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCEEEECCC YGFLRPDDIISKTYDVRFTMKGTSADTIQLEELKEQWQKLQINPTEPIPMLGGKKFRGLL CCCCCCHHHHCCEEEEEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH TSITDGKQVFNFPLDGASGIGVMQRNLKQAIETGIPLNRTE HHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969503; 9384377 [H]