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The map label for this gene is drm

Identifier: 226224559

GI number: 226224559

Start: 2022648

End: 2023832

Strand: Reverse

Name: drm

Synonym: Lm4b_01973

Alternate gene names: 226224559

Gene position: 2023832-2022648 (Counterclockwise)

Preceding gene: 226224560

Following gene: 226224558

Centisome position: 69.48

GC content: 39.07

Gene sequence:

>1185_bases
ATGCCAGATAAATTTAAACGAGTACATGTAGTTGTAATGGATTCAGTTGGTATTGGAGAAGCGCCAGATGCTGCTAAATT
TGGTGATTTTGATGTAGATACATTTGGACATATTGCCAAACACGTCGGCGGACTAAAAATGCCTGAAATGGGCAAATTAG
GTCTATCGAATATTCGAGAAATAGACGGAATTAAAAAAGCAGAAAAACCACTTGCTTACTATACAAAAATGCAAGAAGCT
TCGAACGGTAAAGATACAATGACGGGTCACTGGGAAATCATGGGCCTATACATTGACACGCCTTTCCGCGTATTCCCAGA
TGGATTTCCGGATGATTTAATCAACCAAATTGAAGAAAAAACAGGACGTAAAGTAATTGGAAATAAACCAGCGAGCGGAA
CAGAAATTATGGCTGAACTTGGAGAAGAGCATGTGAAAACAGGTGCGCTTATTGTTTACACATCAGCTGACTCAGTTTTA
CAAATTGCAGCACATGAAGATGTCGTACCTTTGGAAGAATTATATGAAATCTGTGAATTCTGCCGTAAAATTACACTAGA
TGACCCGTACATGCTTGGTCGTATTATCGCTCGTCCATTTGTCGGCGAACCAGGTGCGTTTGTTAGAACGCCAAATCGCC
ATGACTATGCGCTAAAACCATTTAAACCAACTGTAATGGATGCTTTAAAAGATGGCGGTAAAGACGTGATTGCCATTGGT
AAAATTTCTGATATTTTTGATGGTGAAGGTGTTACGGAATCTATCCGTACGAAATCAAATATGGACGGAATGGATCAATT
TATCGCTGTGTTAGATAAAGATTTTAACGGTATGAGTTTCTTGAATTTAGTAGACTTTGATGCACTTTTCGGACATCGTC
GTGATCCACAAGGTTATGCAGATGCGCTCGTTGATTTTGACGGTCGTTTAGTAGAAGTAATGGAAAAACTAACAGATGAT
GATCTATTAATTATTACAGCTGATCACGGAAATGACCCAACATACTCTGGCACAGACCACACACGTGAGTTTGTACCATT
ACTTGTATACTCACCACGCTTCAAAAATGGTGGTTCAGAATTAGAATTACGCAAAACATTTGCCGATCTCGGCGCAACAG
TTGCGGATAATTTTGAAGTGAAAATGCCTGAATATGGAACAAGTTTCTTAAAAGACTTGAAATAG

Upstream 100 bases:

>100_bases
ACACAAATTTATACACACGTAACAAAGCTGCGGTTGAAAGATGTCTACAAACAATTCCACCCGCGCGCTTAAAAAATATA
GTTGAAAAGGATGAGTAAAT

Downstream 100 bases:

>100_bases
GAAAAGGGAGGAACAAAAATGAGTTTAGAAAAAGTAAATGAAGCAGTTGCGAAAATTAGAGAAAGTTACAATGGTACACC
AAAAATTGGTTTGATTCTTG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MPDKFKRVHVVVMDSVGIGEAPDAAKFGDFDVDTFGHIAKHVGGLKMPEMGKLGLSNIREIDGIKKAEKPLAYYTKMQEA
SNGKDTMTGHWEIMGLYIDTPFRVFPDGFPDDLINQIEEKTGRKVIGNKPASGTEIMAELGEEHVKTGALIVYTSADSVL
QIAAHEDVVPLEELYEICEFCRKITLDDPYMLGRIIARPFVGEPGAFVRTPNRHDYALKPFKPTVMDALKDGGKDVIAIG
KISDIFDGEGVTESIRTKSNMDGMDQFIAVLDKDFNGMSFLNLVDFDALFGHRRDPQGYADALVDFDGRLVEVMEKLTDD
DLLIITADHGNDPTYSGTDHTREFVPLLVYSPRFKNGGSELELRKTFADLGATVADNFEVKMPEYGTSFLKDLK

Sequences:

>Translated_394_residues
MPDKFKRVHVVVMDSVGIGEAPDAAKFGDFDVDTFGHIAKHVGGLKMPEMGKLGLSNIREIDGIKKAEKPLAYYTKMQEA
SNGKDTMTGHWEIMGLYIDTPFRVFPDGFPDDLINQIEEKTGRKVIGNKPASGTEIMAELGEEHVKTGALIVYTSADSVL
QIAAHEDVVPLEELYEICEFCRKITLDDPYMLGRIIARPFVGEPGAFVRTPNRHDYALKPFKPTVMDALKDGGKDVIAIG
KISDIFDGEGVTESIRTKSNMDGMDQFIAVLDKDFNGMSFLNLVDFDALFGHRRDPQGYADALVDFDGRLVEVMEKLTDD
DLLIITADHGNDPTYSGTDHTREFVPLLVYSPRFKNGGSELELRKTFADLGATVADNFEVKMPEYGTSFLKDLK
>Mature_393_residues
PDKFKRVHVVVMDSVGIGEAPDAAKFGDFDVDTFGHIAKHVGGLKMPEMGKLGLSNIREIDGIKKAEKPLAYYTKMQEAS
NGKDTMTGHWEIMGLYIDTPFRVFPDGFPDDLINQIEEKTGRKVIGNKPASGTEIMAELGEEHVKTGALIVYTSADSVLQ
IAAHEDVVPLEELYEICEFCRKITLDDPYMLGRIIARPFVGEPGAFVRTPNRHDYALKPFKPTVMDALKDGGKDVIAIGK
ISDIFDGEGVTESIRTKSNMDGMDQFIAVLDKDFNGMSFLNLVDFDALFGHRRDPQGYADALVDFDGRLVEVMEKLTDDD
LLIITADHGNDPTYSGTDHTREFVPLLVYSPRFKNGGSELELRKTFADLGATVADNFEVKMPEYGTSFLKDLK

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=412, Percent_Identity=43.2038834951456, Blast_Score=310, Evalue=9e-86,
Organism=Escherichia coli, GI1789781, Length=419, Percent_Identity=27.6849642004773, Blast_Score=109, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 43704; Mature: 43573

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDKFKRVHVVVMDSVGIGEAPDAAKFGDFDVDTFGHIAKHVGGLKMPEMGKLGLSNIRE
CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHH
IDGIKKAEKPLAYYTKMQEASNGKDTMTGHWEIMGLYIDTPFRVFPDGFPDDLINQIEEK
HHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCEECCCCCCHHHHHHHHHH
TGRKVIGNKPASGTEIMAELGEEHVKTGALIVYTSADSVLQIAAHEDVVPLEELYEICEF
CCCEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHH
CRKITLDDPYMLGRIIARPFVGEPGAFVRTPNRHDYALKPFKPTVMDALKDGGKDVIAIG
HHHCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEEC
KISDIFDGEGVTESIRTKSNMDGMDQFIAVLDKDFNGMSFLNLVDFDALFGHRRDPQGYA
CCHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHH
DALVDFDGRLVEVMEKLTDDDLLIITADHGNDPTYSGTDHTREFVPLLVYSPRFKNGGSE
HHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHEEEEEECCCCCCCCCC
LELRKTFADLGATVADNFEVKMPEYGTSFLKDLK
HHHHHHHHHHCCHHHCCCEEECCHHHHHHHHHCC
>Mature Secondary Structure 
PDKFKRVHVVVMDSVGIGEAPDAAKFGDFDVDTFGHIAKHVGGLKMPEMGKLGLSNIRE
CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHH
IDGIKKAEKPLAYYTKMQEASNGKDTMTGHWEIMGLYIDTPFRVFPDGFPDDLINQIEEK
HHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCEECCCCCCHHHHHHHHHH
TGRKVIGNKPASGTEIMAELGEEHVKTGALIVYTSADSVLQIAAHEDVVPLEELYEICEF
CCCEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHH
CRKITLDDPYMLGRIIARPFVGEPGAFVRTPNRHDYALKPFKPTVMDALKDGGKDVIAIG
HHHCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEEC
KISDIFDGEGVTESIRTKSNMDGMDQFIAVLDKDFNGMSFLNLVDFDALFGHRRDPQGYA
CCHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHH
DALVDFDGRLVEVMEKLTDDDLLIITADHGNDPTYSGTDHTREFVPLLVYSPRFKNGGSE
HHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHEEEEEECCCCCCCCCC
LELRKTFADLGATVADNFEVKMPEYGTSFLKDLK
HHHHHHHHHHCCHHHCCCEEECCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]