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The map label for this gene is dnaD

Identifier: 226224499

GI number: 226224499

Start: 1956033

End: 1956752

Strand: Reverse

Name: dnaD

Synonym: Lm4b_01912

Alternate gene names: 226224499

Gene position: 1956752-1956033 (Counterclockwise)

Preceding gene: 226224500

Following gene: 226224498

Centisome position: 67.18

GC content: 38.06

Gene sequence:

>720_bases
ATGAATCCAAAAATTCTTGAAAAATGGATGGCTGAAGGGCAAGTGACATTACCGCAAGTGCTAGTGAAAAACTATGCAAC
CATTGGCTTAAACGAAATAGAACTAGTGCTATTACTTCAAATTCAATCCTTTGCAGCAGAGGCAGAATTTTTCCCGTCGA
TGGAAATGTTAACCAATAGAACAACGCTTCCACTGGAAGAAACAATTAAAACGATGGACTCACTCTTGAAAAAAGGTGTG
ATTGCTATCGAACAAAGCCAAGATAATTCACGAATGATTTCTGAACAATATAATTTGGCACCACTCTGGGGTAAACTAGT
CGCTTTATATGAAAACAAGGAAGCAGATAGTAAACATGAAAAAGAGTTAGAAAAACAAACCAGTTTATATACTCTATTCG
AAGCAGAGTTTGGAAGACCGCTTTCTCCAATGGAAGCAGAAATGTTATCCGCGTGGGTAGAGCAAGATAGAACGAGCACG
GATTTAATCAAAGAAGCATTAAAAGAAGCTGTTATTTCGCAAAAATTAAATTTCCGATATATTGATAGGATTCTGCTTAA
CTGGTCGAAACAAGGAGTTAAGACAATAGAAGATGCCAAGCGTGTAGCGGAAGAATTTCATCAAAATGGGCGCACAAGCC
AAGCAATTAACCAAACGGAAGTGAAAAAAAGCGCAGGTTCGATTCCTCTATACGACTGGCTTGAAAAAAGAAAAGGGTGA

Upstream 100 bases:

>100_bases
AATTGAAAATAATCTTTTCCGCGGGATTTCATGATTTTAGCAGTACTTTTATATTTTTCCCTCGAAAACCATGTTATAAT
TTTGTAGTGAGGTGTTAAAT

Downstream 100 bases:

>100_bases
GGTACACAAATTGTTATCGAATAAACAAACCGTATTATGCATAGAAGAAATGGCAAAAATGTTTCCAGCAGCACACTGTG
AGCTAGTTCATAAAAATACG

Product: chromosome replication initiation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MNPKILEKWMAEGQVTLPQVLVKNYATIGLNEIELVLLLQIQSFAAEAEFFPSMEMLTNRTTLPLEETIKTMDSLLKKGV
IAIEQSQDNSRMISEQYNLAPLWGKLVALYENKEADSKHEKELEKQTSLYTLFEAEFGRPLSPMEAEMLSAWVEQDRTST
DLIKEALKEAVISQKLNFRYIDRILLNWSKQGVKTIEDAKRVAEEFHQNGRTSQAINQTEVKKSAGSIPLYDWLEKRKG

Sequences:

>Translated_239_residues
MNPKILEKWMAEGQVTLPQVLVKNYATIGLNEIELVLLLQIQSFAAEAEFFPSMEMLTNRTTLPLEETIKTMDSLLKKGV
IAIEQSQDNSRMISEQYNLAPLWGKLVALYENKEADSKHEKELEKQTSLYTLFEAEFGRPLSPMEAEMLSAWVEQDRTST
DLIKEALKEAVISQKLNFRYIDRILLNWSKQGVKTIEDAKRVAEEFHQNGRTSQAINQTEVKKSAGSIPLYDWLEKRKG
>Mature_239_residues
MNPKILEKWMAEGQVTLPQVLVKNYATIGLNEIELVLLLQIQSFAAEAEFFPSMEMLTNRTTLPLEETIKTMDSLLKKGV
IAIEQSQDNSRMISEQYNLAPLWGKLVALYENKEADSKHEKELEKQTSLYTLFEAEFGRPLSPMEAEMLSAWVEQDRTST
DLIKEALKEAVISQKLNFRYIDRILLNWSKQGVKTIEDAKRVAEEFHQNGRTSQAINQTEVKKSAGSIPLYDWLEKRKG

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 27413; Mature: 27413

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPKILEKWMAEGQVTLPQVLVKNYATIGLNEIELVLLLQIQSFAAEAEFFPSMEMLTNR
CCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
TTLPLEETIKTMDSLLKKGVIAIEQSQDNSRMISEQYNLAPLWGKLVALYENKEADSKHE
CCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHH
KELEKQTSLYTLFEAEFGRPLSPMEAEMLSAWVEQDRTSTDLIKEALKEAVISQKLNFRY
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHH
IDRILLNWSKQGVKTIEDAKRVAEEFHQNGRTSQAINQTEVKKSAGSIPLYDWLEKRKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCC
>Mature Secondary Structure
MNPKILEKWMAEGQVTLPQVLVKNYATIGLNEIELVLLLQIQSFAAEAEFFPSMEMLTNR
CCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
TTLPLEETIKTMDSLLKKGVIAIEQSQDNSRMISEQYNLAPLWGKLVALYENKEADSKHE
CCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHH
KELEKQTSLYTLFEAEFGRPLSPMEAEMLSAWVEQDRTSTDLIKEALKEAVISQKLNFRY
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHH
IDRILLNWSKQGVKTIEDAKRVAEEFHQNGRTSQAINQTEVKKSAGSIPLYDWLEKRKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]