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The map label for this gene is rimM

Identifier: 226224396

GI number: 226224396

Start: 1851832

End: 1852350

Strand: Reverse

Name: rimM

Synonym: Lm4b_01809

Alternate gene names: 226224396

Gene position: 1852350-1851832 (Counterclockwise)

Preceding gene: 226224397

Following gene: 226224395

Centisome position: 63.6

GC content: 36.03

Gene sequence:

>519_bases
ATGGAGAAAATGTATAATGTAGGAAAAATTGTTAATACTCATGGCTTGATCGGTGAAATTCGTGTTATCGCAACGACCGA
TTTTCCAGAAGAACGGTTCCAAGTTGGGAATACCGTGTACTTATTTGAAAAAAACAGCAAAAAGCCTGAAAAACTAATCA
TTCGCTCACACCGCAAACATAAGAACTTTGATTTGCTGATGTTTGAAGGATTCACTGGAATTCATCAAGTGGAACGTATG
AAAGAAGGCGTACTTAAAATCAAAGAAGCGCAACTAACTGATTTAGAGGAAAACGAATTTTATTTTCATGAAATCATCGG
TTGTATCGTTGTAACTACTGACGGCAAAGAGCTTGGCGAAATCACAGAAATTCTAACACCAGGCGCCAATGATGTATGGG
TTGTAAAAGGCAGCGACAAAAAAGAAAAACTAATTCCTTATATTGCCGACGTTGTAAAAGAAATCAATATTAATGACAAA
AAAATTACAATCGAAGTCATGGAAGGACTGCTAGATTAA

Upstream 100 bases:

>100_bases
TATTGATGTACAAGTAGGAGACAAGTGGGATAAATCCATTTTTGATAAAACCATTGTTGTAAAAGATGGAATCATAGTAG
AAATACGCTAGAGGTGACTT

Downstream 100 bases:

>100_bases
TGAAAATTGACATTCTATCCATTTTCCCAGATATGTTTTCGGGAGTGACCGGGAATTCCATTATAAAAAAAGCCATCGAA
AACGAGCGTGTCGCGGTTGA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNFDLLMFEGFTGIHQVERM
KEGVLKIKEAQLTDLEENEFYFHEIIGCIVVTTDGKELGEITEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDK
KITIEVMEGLLD

Sequences:

>Translated_172_residues
MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNFDLLMFEGFTGIHQVERM
KEGVLKIKEAQLTDLEENEFYFHEIIGCIVVTTDGKELGEITEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDK
KITIEVMEGLLD
>Mature_172_residues
MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNFDLLMFEGFTGIHQVERM
KEGVLKIKEAQLTDLEENEFYFHEIIGCIVVTTDGKELGEITEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDK
KITIEVMEGLLD

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=170, Percent_Identity=25.2941176470588, Blast_Score=78, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19750; Mature: 19750

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH
CCCCHHHHHHHCCCCCEEEEEEEEECCCCHHHHHCCCEEEEEECCCCCHHHHHHHHCCCC
KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCIVVTTDGKELGE
CCCEEEEECCCCHHHHHHHHHHHHHEEHHHHCCCCCCCCHHHHHEEEEEEEEECCHHHHH
ITEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDKKITIEVMEGLLD
HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCC
>Mature Secondary Structure
MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH
CCCCHHHHHHHCCCCCEEEEEEEEECCCCHHHHHCCCEEEEEECCCCCHHHHHHHHCCCC
KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCIVVTTDGKELGE
CCCEEEEECCCCHHHHHHHHHHHHHEEHHHHCCCCCCCCHHHHHEEEEEEEEECCHHHHH
ITEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDKKITIEVMEGLLD
HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]