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The map label for this gene is yckA [H]

Identifier: 226224343

GI number: 226224343

Start: 1795548

End: 1796189

Strand: Reverse

Name: yckA [H]

Synonym: Lm4b_01754

Alternate gene names: 226224343

Gene position: 1796189-1795548 (Counterclockwise)

Preceding gene: 226224344

Following gene: 226224342

Centisome position: 61.67

GC content: 36.14

Gene sequence:

>642_bases
ATGGATTATATCATGGAGATTTTACCAGCATTACTTGATGGGGCAAAAACAACACTGCTCGTTTTTGCAGTTACGTTAGT
TTGTTCGATACCACTCGGGGCGGTTGTGGCAGTCGGAAATATTAGCAAAATAGCCCCACTTAAATTTATTTTAAATATTT
ACATTTGGATTATGCGAGGCACGCCATTACTTTTACAATTAATTTTTATTTATTATGGCTTACCGATTATCGGGGTTGTT
TTTGACCGAATGGATGCCGTTTTTATTGCTTTTATTTTAAATTATGCAGCTTATTTTGCAGAGATTTTCCGCGGGGGATT
TCTTTCCATCGAAAATGGGCAATATGAGAGCGCCAAGGTTTTAGGTCTTACTTACGGCCAGACACTGCGGAAAATTGTCT
TACCACAAGTTGTCAAACGTGTCTTACCAGCAATTGGGAATGAAGTTATTAACTTAGTAAAAGACTCTTCTTTAGTATAT
ATTCTTGGAATTGGCGACTTACTAAGAGCAGGGAAAATTGCTATGAGTAGAGATGTTACACTGATTCCACTCGTATTAGT
AGCTGCAATCTACTTAGCTTTAACGGCTATTCTAACCATATTATTTAAACAACTCGAAAAACGTTTTAGTTATTATAAAT
GA

Upstream 100 bases:

>100_bases
CAAATTGAGGTGGAACCACGTGAATATTATTCTCGTCCTCTTGGCCAATTAGCGCCAAGTGCGACGGGATTTTTTTATGT
TAAAAAAGGAGCGAAGAATG

Downstream 100 bases:

>100_bases
GGTGAAGAAAATGTTAGAAATTAAGAATCTATCGAAAAAATTTGATCAAAAAACAATTTTAGATAATGTGAATATTTCTC
TTCAAGATGGTGAAATTCTC

Product: amino acid (glutamine) ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MDYIMEILPALLDGAKTTLLVFAVTLVCSIPLGAVVAVGNISKIAPLKFILNIYIWIMRGTPLLLQLIFIYYGLPIIGVV
FDRMDAVFIAFILNYAAYFAEIFRGGFLSIENGQYESAKVLGLTYGQTLRKIVLPQVVKRVLPAIGNEVINLVKDSSLVY
ILGIGDLLRAGKIAMSRDVTLIPLVLVAAIYLALTAILTILFKQLEKRFSYYK

Sequences:

>Translated_213_residues
MDYIMEILPALLDGAKTTLLVFAVTLVCSIPLGAVVAVGNISKIAPLKFILNIYIWIMRGTPLLLQLIFIYYGLPIIGVV
FDRMDAVFIAFILNYAAYFAEIFRGGFLSIENGQYESAKVLGLTYGQTLRKIVLPQVVKRVLPAIGNEVINLVKDSSLVY
ILGIGDLLRAGKIAMSRDVTLIPLVLVAAIYLALTAILTILFKQLEKRFSYYK
>Mature_213_residues
MDYIMEILPALLDGAKTTLLVFAVTLVCSIPLGAVVAVGNISKIAPLKFILNIYIWIMRGTPLLLQLIFIYYGLPIIGVV
FDRMDAVFIAFILNYAAYFAEIFRGGFLSIENGQYESAKVLGLTYGQTLRKIVLPQVVKRVLPAIGNEVINLVKDSSLVY
ILGIGDLLRAGKIAMSRDVTLIPLVLVAAIYLALTAILTILFKQLEKRFSYYK

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=208, Percent_Identity=36.5384615384615, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787030, Length=208, Percent_Identity=31.7307692307692, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786873, Length=214, Percent_Identity=31.7757009345794, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1788646, Length=214, Percent_Identity=31.7757009345794, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87082239, Length=205, Percent_Identity=32.6829268292683, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788645, Length=214, Percent_Identity=29.9065420560748, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1787086, Length=215, Percent_Identity=28.3720930232558, Blast_Score=88, Evalue=3e-19,
Organism=Escherichia coli, GI1787087, Length=233, Percent_Identity=27.0386266094421, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI48994930, Length=218, Percent_Identity=25.6880733944954, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23581; Mature: 23581

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYIMEILPALLDGAKTTLLVFAVTLVCSIPLGAVVAVGNISKIAPLKFILNIYIWIMRG
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
TPLLLQLIFIYYGLPIIGVVFDRMDAVFIAFILNYAAYFAEIFRGGFLSIENGQYESAKV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHH
LGLTYGQTLRKIVLPQVVKRVLPAIGNEVINLVKDSSLVYILGIGDLLRAGKIAMSRDVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCHHHHCCCH
LIPLVLVAAIYLALTAILTILFKQLEKRFSYYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDYIMEILPALLDGAKTTLLVFAVTLVCSIPLGAVVAVGNISKIAPLKFILNIYIWIMRG
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
TPLLLQLIFIYYGLPIIGVVFDRMDAVFIAFILNYAAYFAEIFRGGFLSIENGQYESAKV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHH
LGLTYGQTLRKIVLPQVVKRVLPAIGNEVINLVKDSSLVYILGIGDLLRAGKIAMSRDVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCHHHHCCCH
LIPLVLVAAIYLALTAILTILFKQLEKRFSYYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]