Click here to switch to the map view.

The map label for this gene is pduA [H]

Identifier: 226223781

GI number: 226223781

Start: 1190944

End: 1191228

Strand: Direct

Name: pduA [H]

Synonym: Lm4b_01185

Alternate gene names: 226223781

Gene position: 1190944-1191228 (Clockwise)

Preceding gene: 226223780

Following gene: 226223782

Centisome position: 40.89

GC content: 47.37

Gene sequence:

>285_bases
ATGGCAAACGCAAACGCATTAGGTATGATCGAAACTAAAGGTTTAGTAGGAGCAGTAGAGGCAGCAGACGCAATGGTGAA
AGCAGCTAACGTAACACTTATGGGTAAAGAACAAGTTGGTGGCGGTCTAGTAACAGTTATGGTTCGCGGCGATGTTGGCG
CAGTTAAAGCAGCAACAGATGCAGGCGCAGCAGCAGCAGAACGCGTTGGTGAATTACTATCTGTACACGTAATCCCACGT
CCACACAGCGAAGTAGACGCAATTCTACCAAAAAGCGCTGAATAA

Upstream 100 bases:

>100_bases
GAACTTCCGGTTGATGCAGACGCACTCATCCAAAGTTTAGTCGAAAAAGTTTTAGCAGAATTAAAATAAAAAATAAAACA
CTAATTGGAGGAATTTTAAA

Downstream 100 bases:

>100_bases
GACTAACTTTTAACATAAATCAGGAAAAAGCGTGAGCGTAAGGCAAAAGGGTTCCATCAGACTCGGAAATTGCCCGAAAC
TTTCGCTTTTTACCAGATTT

Product: carboxysome structural protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MANANALGMIETKGLVGAVEAADAMVKAANVTLMGKEQVGGGLVTVMVRGDVGAVKAATDAGAAAAERVGELLSVHVIPR
PHSEVDAILPKSAE

Sequences:

>Translated_94_residues
MANANALGMIETKGLVGAVEAADAMVKAANVTLMGKEQVGGGLVTVMVRGDVGAVKAATDAGAAAAERVGELLSVHVIPR
PHSEVDAILPKSAE
>Mature_93_residues
ANANALGMIETKGLVGAVEAADAMVKAANVTLMGKEQVGGGLVTVMVRGDVGAVKAATDAGAAAAERVGELLSVHVIPRP
HSEVDAILPKSAE

Specific function: May Be Involved In The Formation Of A Specific Microcompartiment In The Cell In Which The Metabolism Of Potentially Toxic By-Products Takes Place. [C]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

Organism=Escherichia coli, GI87082108, Length=86, Percent_Identity=69.7674418604651, Blast_Score=106, Evalue=3e-25,
Organism=Escherichia coli, GI87082105, Length=85, Percent_Identity=47.0588235294118, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 9347; Mature: 9216

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS01139 BACT_MICROCOMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANANALGMIETKGLVGAVEAADAMVKAANVTLMGKEQVGGGLVTVMVRGDVGAVKAATD
CCCCCCCEEEECCCCEEHHHHHHHHHHHCCEEEEECCCCCCEEEEEEEECCCCCEEECCC
AGAAAAERVGELLSVHVIPRPHSEVDAILPKSAE
CCHHHHHHHHHHHEEEECCCCCCCHHHCCCCCCC
>Mature Secondary Structure 
ANANALGMIETKGLVGAVEAADAMVKAANVTLMGKEQVGGGLVTVMVRGDVGAVKAATD
CCCCCCEEEECCCCEEHHHHHHHHHHHCCEEEEECCCCCCEEEEEEEECCCCCEEECCC
AGAAAAERVGELLSVHVIPRPHSEVDAILPKSAE
CCHHHHHHHHHHHEEEECCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]