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The map label for this gene is ccmK [H]

Identifier: 226223779

GI number: 226223779

Start: 1188931

End: 1189452

Strand: Direct

Name: ccmK [H]

Synonym: Lm4b_01183

Alternate gene names: 226223779

Gene position: 1188931-1189452 (Clockwise)

Preceding gene: 226223778

Following gene: 226223780

Centisome position: 40.82

GC content: 37.55

Gene sequence:

>522_bases
ATGCCAAATGAAGCGCTTGGTTTAATTGAAGTCACAGGTTTTCTTGGTGCTGTTGTTGCTGCCGACACTTGTTTAAAAGC
AGCAAATGTCGAACTGATTCAATGTGAAGTCATTCGTGGTGGTTTAACTACGGTTGAATTAACTGGTGATGTAGGTGCAG
TAAATGCAGCTATCGAAGCAGGGAAAGCTGCAACAGAAGACTTAGGTTGTTTAGTATCAAGCCATGTTATCGCAAGAATG
AGCGAAGATACAAAAGCACTTTTTGTTCCTCAAGAAGAAGTTAAAACACAACCAAAAGAAGTCGAACAAGAAGAACCAAA
AGAAGTTATTCAACAAATCGTAGAAGTGAACACAAACACGAAAAGTGCAGAGAAAAAACTTCGCGCAATGAAAGTTATTG
ATCTAAGGAAACTTGCTTACACATTAAATAATGTGCCTATCCCAAAAAGCAAGATTAAATATGCGAACAAGGATAAACTT
GTTCACGCACTAAAAGATATTTATGGAAGGAGTGAAAACTAG

Upstream 100 bases:

>100_bases
CTGGTAGCCAATCTGCATGTAAAGCAGCTTGTGATGCGTTCAAAATGGCAGTAGAAAATGTGGCTGAAAATCCACTTCAA
TATTAAGGTGGTGCTAAAAA

Downstream 100 bases:

>100_bases
TGGCACTAGAAGATAAAGATTTACGCTCAATCCAAGAAGTTCGTAACCTCATTGAATCAGCTAACAAAGCACAAAAAGAA
CTTGCTGCAATGAGCCAACA

Product: carboxysome structural protein

Products: NA

Alternate protein names: Carboxysome shell protein CsoS1 [H]

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MPNEALGLIEVTGFLGAVVAADTCLKAANVELIQCEVIRGGLTTVELTGDVGAVNAAIEAGKAATEDLGCLVSSHVIARM
SEDTKALFVPQEEVKTQPKEVEQEEPKEVIQQIVEVNTNTKSAEKKLRAMKVIDLRKLAYTLNNVPIPKSKIKYANKDKL
VHALKDIYGRSEN

Sequences:

>Translated_173_residues
MPNEALGLIEVTGFLGAVVAADTCLKAANVELIQCEVIRGGLTTVELTGDVGAVNAAIEAGKAATEDLGCLVSSHVIARM
SEDTKALFVPQEEVKTQPKEVEQEEPKEVIQQIVEVNTNTKSAEKKLRAMKVIDLRKLAYTLNNVPIPKSKIKYANKDKL
VHALKDIYGRSEN
>Mature_172_residues
PNEALGLIEVTGFLGAVVAADTCLKAANVELIQCEVIRGGLTTVELTGDVGAVNAAIEAGKAATEDLGCLVSSHVIARMS
EDTKALFVPQEEVKTQPKEVEQEEPKEVIQQIVEVNTNTKSAEKKLRAMKVIDLRKLAYTLNNVPIPKSKIKYANKDKLV
HALKDIYGRSEN

Specific function: May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered [H]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 18742; Mature: 18611

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNEALGLIEVTGFLGAVVAADTCLKAANVELIQCEVIRGGLTTVELTGDVGAVNAAIEA
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHH
GKAATEDLGCLVSSHVIARMSEDTKALFVPQEEVKTQPKEVEQEEPKEVIQQIVEVNTNT
CCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCHHCCCCCHHHHHHHHHHCCCCC
KSAEKKLRAMKVIDLRKLAYTLNNVPIPKSKIKYANKDKLVHALKDIYGRSEN
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PNEALGLIEVTGFLGAVVAADTCLKAANVELIQCEVIRGGLTTVELTGDVGAVNAAIEA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHH
GKAATEDLGCLVSSHVIARMSEDTKALFVPQEEVKTQPKEVEQEEPKEVIQQIVEVNTNT
CCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCHHCCCCCHHHHHHHHHHCCCCC
KSAEKKLRAMKVIDLRKLAYTLNNVPIPKSKIKYANKDKLVHALKDIYGRSEN
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12917486 [H]