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The map label for this gene is dapL [H]

Identifier: 226223630

GI number: 226223630

Start: 1042497

End: 1043612

Strand: Direct

Name: dapL [H]

Synonym: Lm4b_01032

Alternate gene names: 226223630

Gene position: 1042497-1043612 (Clockwise)

Preceding gene: 226223629

Following gene: 226223632

Centisome position: 35.79

GC content: 40.41

Gene sequence:

>1116_bases
GTGTTAAATGAATTTATTGCCATTCGACGAGAGTTACACCAAATTCCTGAAACAGGTTATAAAGAGCTTAAAACCCAAGC
CTATTTATTAGACTATATTAGCAAATTACCGAGTGAACATTTAGAAGTGAAAAAATGGCGTACGGGGATTTTGGTTTTAG
TAAAAGGAACTAATCCAGAAAAAACAATTGGTTATCGTACCGATATTGATGCGTTGCCAATTACAGAAGAAACTGGGCTG
CCTTTTGCATCAAAACATCCTGGCAATATGCATGCTTGTGGGCACGATTTACATATGAGTATCGCGCTTGGTGTATTGAC
GCATTTTGCGAGTAAACCAGCCAAAGATAATTTGCTTTTCGTTTTCCAGCCTGCCGAAGAAGGTCCAGGTGGTGCAAAAC
CCATCATGGAAAGCGCTGAATTTGCCGAGTGGCGACCGGATAGCATTTATGGGCTTCATATCGCACCAGAATACAAAGTC
GGAGAAATTGCAATTAAGCCAGGTTTACTTTTTGCGAATACATCGGAACTTTTTATTTCGTTTAAAGGAAAAGGTGGACA
CGCGGCGTATCCTCATTTGGCGAATGATATGGTTGTCGCAGCAAGTGCGTTTGTTGGGCAAATGCAAACGATTATAAGTC
GGAATATTGATCCAATGGATAGTGCAGTTATTACGATTGGCCGAATTCATGGCGGAGAAATTCAAAATGTCATTGCGGAA
ACTGCTTATTTAGATGGAACCATTCGAACGCTTTCCCCTGAAACAATGGAGATTGTTTGGACTCGTTTGAAACAGCTAGC
GAAAGGCTGGGAAGAAGCTTACCAATGCGAAGTTGAATTTCATCCTGGCTCGGATTATTATCAAGTGGACAATGATCCAG
TTGAAACAGAAGCATTCATCCACTTTTTGGAAGAACAATATCCAGAAAGTTATGTGCCAGCTCGTTCGGCGATGACTGGA
GAAGACTTTGGTTACTTTTTATCCGAAATCAAAGGGTTTATGTTTTGGTTAGGCGTGGATTCCGAGTACAGTTTGCATCA
TGCGAAACTTAGTCCAAAAGAAGAAGCTATTCCATTTGCAATTGATGTATTAATCCACTTTTTGGAAAGTAAATAA

Upstream 100 bases:

>100_bases
TAAAACTGAAATCATGCAAGAACTTCGTCAACTTTAAAAATTAAAGGGAACTGTTTCGTCTGTTGGCGAAGCAGTCCTTT
TTTAGAAGGAGAGAATCGCT

Downstream 100 bases:

>100_bases
AAAGACGTCAATTCGTTCTCAAAAGGAGCGAATTGGCGTCTTTTTAATTATTATTTGGTCCGAAGGTGCTGACAAAATTA
AGTGGTAACTCGATTTCGTT

Product: N-acyl-L-amino acid amidohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MLNEFIAIRRELHQIPETGYKELKTQAYLLDYISKLPSEHLEVKKWRTGILVLVKGTNPEKTIGYRTDIDALPITEETGL
PFASKHPGNMHACGHDLHMSIALGVLTHFASKPAKDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKV
GEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAVITIGRIHGGEIQNVIAE
TAYLDGTIRTLSPETMEIVWTRLKQLAKGWEEAYQCEVEFHPGSDYYQVDNDPVETEAFIHFLEEQYPESYVPARSAMTG
EDFGYFLSEIKGFMFWLGVDSEYSLHHAKLSPKEEAIPFAIDVLIHFLESK

Sequences:

>Translated_371_residues
MLNEFIAIRRELHQIPETGYKELKTQAYLLDYISKLPSEHLEVKKWRTGILVLVKGTNPEKTIGYRTDIDALPITEETGL
PFASKHPGNMHACGHDLHMSIALGVLTHFASKPAKDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKV
GEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAVITIGRIHGGEIQNVIAE
TAYLDGTIRTLSPETMEIVWTRLKQLAKGWEEAYQCEVEFHPGSDYYQVDNDPVETEAFIHFLEEQYPESYVPARSAMTG
EDFGYFLSEIKGFMFWLGVDSEYSLHHAKLSPKEEAIPFAIDVLIHFLESK
>Mature_371_residues
MLNEFIAIRRELHQIPETGYKELKTQAYLLDYISKLPSEHLEVKKWRTGILVLVKGTNPEKTIGYRTDIDALPITEETGL
PFASKHPGNMHACGHDLHMSIALGVLTHFASKPAKDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKV
GEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAVITIGRIHGGEIQNVIAE
TAYLDGTIRTLSPETMEIVWTRLKQLAKGWEEAYQCEVEFHPGSDYYQVDNDPVETEAFIHFLEEQYPESYVPARSAMTG
EDFGYFLSEIKGFMFWLGVDSEYSLHHAKLSPKEEAIPFAIDVLIHFLESK

Specific function: Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate [H]

COG id: COG1473

COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family. DapL subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081880, Length=243, Percent_Identity=27.9835390946502, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017439
- InterPro:   IPR010168
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.47 [H]

Molecular weight: Translated: 41516; Mature: 41516

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNEFIAIRRELHQIPETGYKELKTQAYLLDYISKLPSEHLEVKKWRTGILVLVKGTNPE
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHEECCEEEEEEECCCCC
KTIGYRTDIDALPITEETGLPFASKHPGNMHACGHDLHMSIALGVLTHFASKPAKDNLLF
CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
VFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKVGEIAIKPGLLFANTSELFIS
EEECCCCCCCCCCHHHHCCHHCCCCCCCEEEEEECCCCCCCEEEECCCEEEECCCEEEEE
FKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAVITIGRIHGGEIQNVIAE
EECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHH
TAYLDGTIRTLSPETMEIVWTRLKQLAKGWEEAYQCEVEFHPGSDYYQVDNDPVETEAFI
HHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEECCCCCCHHHHHH
HFLEEQYPESYVPARSAMTGEDFGYFLSEIKGFMFWLGVDSEYSLHHAKLSPKEEAIPFA
HHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHEEEEEECCCCCCEEECCCCCCHHCCHHH
IDVLIHFLESK
HHHHHHHHHCC
>Mature Secondary Structure
MLNEFIAIRRELHQIPETGYKELKTQAYLLDYISKLPSEHLEVKKWRTGILVLVKGTNPE
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHEECCEEEEEEECCCCC
KTIGYRTDIDALPITEETGLPFASKHPGNMHACGHDLHMSIALGVLTHFASKPAKDNLLF
CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
VFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKVGEIAIKPGLLFANTSELFIS
EEECCCCCCCCCCHHHHCCHHCCCCCCCEEEEEECCCCCCCEEEECCCEEEECCCEEEEE
FKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAVITIGRIHGGEIQNVIAE
EECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHH
TAYLDGTIRTLSPETMEIVWTRLKQLAKGWEEAYQCEVEFHPGSDYYQVDNDPVETEAFI
HHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEECCCCCCHHHHHH
HFLEEQYPESYVPARSAMTGEDFGYFLSEIKGFMFWLGVDSEYSLHHAKLSPKEEAIPFA
HHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHEEEEEECCCCCCEEECCCCCCHHCCHHH
IDVLIHFLESK
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA