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The map label for this gene is ykcB [H]

Identifier: 226223552

GI number: 226223552

Start: 970672

End: 972729

Strand: Reverse

Name: ykcB [H]

Synonym: Lm4b_00952

Alternate gene names: 226223552

Gene position: 972729-970672 (Counterclockwise)

Preceding gene: 226223556

Following gene: 226223551

Centisome position: 33.4

GC content: 40.91

Gene sequence:

>2058_bases
ATGAAGAAACGGATACAACATTTAGATTTTTATTTTGTTGGAATTATTGTTATTGCCATCTTTTTTAATTTTTATGGTAT
TTGGAATGATGATACGGTAAATCCTTATTATACAGCTGCTGTGACAAGTATGGTGCAAAATATTCATAATTTTTTCTACG
GAGCTTTTGATCCTGCTGGTTTTATTACGGTAGATAAGCCACCTGTTGCACTTTGGTTGCAAGCGATCAGTGCCCTTATT
TTCGGCATACATGGTTGGAGTGTTATCTTACCACAAGCGTTGGCTGGTGTTGGTTCGGTGATTTTGCTTTATGTGCTCGT
CAAACCTAGATTTGGCGCATGGGCTGCAAGAATTACTGCTTTGATTATGGCGCTGACTCCTATTGCGGTAGCCGTGACGC
GTACTAATAATATGGATGCTATTCTTGTATTTGTGTTATTACTAGCAACCTTTTTCCTTTTTAAAGCTGTTCATCGTGCA
AAAATCGGCTGGCTTTTACTTTCTTTTGCGTTGATTGGTGTCGGTTTTAATGTAAAAATGCTCCAAGCTTTCATGGTCGT
GCCCGCATTTTTGCTCTTCTATTTTATTGCTACAAAACTAAGTTGGAGAAAAAAGCTAGTTCAATTAGTAATCGCACTTG
TCTTAATGCTAGGTGTCTCTGTTTCTTGGGCAGTCGTAGTTGATCAAACAGCTGCTTCAGAGCGACCTTATATCGGTAGT
AGTCAAACCAATTCGGTGCTTGAGTTGGCATTTGGCTATAATGGTATGGAACGGCTTCTTGGTCAAGAAACTGGAACAGG
TAGTAATGGTAATGTGGAAATGGGGACTCCTCCTAGCACTAACTCAACAGATTCAAGTAACGCAACCCCACCGACTCCTC
CAAGTGGAAGTATGCAGGACGGTGCTAACGGCGGAACTCCTCCTCAAGGAAATAATGGCACTCCTCCAACTGGAGCTCCC
AGTAATGCGGCAAACGGCGGCGGGAATGGATCAAAAATGACTGGTAGCACAGGCATGTTTGGAACAGGGAACGCTGGACC
ACTTCGTCTATTCCAAACCGCACTTGGTGATCAAATTAGTTGGTTCTTACCACTTGCTATTATCGGTATGCTAGCCATTT
TCCTGGTGTATCGAAATGAAAATAAACGAATTTATCAATTGACCTCCAGACAAAAGGAAATAGTTTTCTGGGCAGCTTGG
CTTATCCCTGTCGCCGGATTCTTTAGTATCGCTGGCTTTTTCCATCATTATTATTTGATTATGCTAGCTCCGCCAATTGC
TTTACTTAGTGGCGTAGGTCTAGTGGCGCTCTTTCGGTTATACCAAGACAAAGAGAATTGGCAAAGGTTCCTGCTACCTG
CTGCAGTTACGCTAACTGGAGGTCTACAAGCATTCTTTGTTGCTGCTTACTTGCCTGTTTTAGCGGTAGTTATTGGTATT
GCTGCACTAATTACGTCTATTATCTTAATTGTACTTAGACCACAACCTTCCAAACTCACCGCGAAAATAACAGCGCTCGC
TTTAGCGATTTTGCTCATTGCTCCAACATATTGGTCTTTAACACCTATTTTATATGGTGGGAATAGTTCCTTACCCGAAG
CTGGACCACAATTAAAACAATCTAGTGGTGGTGGATTCGCCGATGCATCTGTTGATAGTGATTTAATTAGCTATTTACAG
AAAAACAATACCGGAGAAACCTACTTATTTGGGACAACAGATGCAACAACAGCAGGTCCTTATATTATTAAAACGAAAGA
AGCTGTTATGGCACTTGGTGGTTTCAATGGAACAGATCCAACTCTAACTGTAAAACAATTAAAACAAATGATTCAAGCCG
GTGAAATAAAATATTTCTATCTCCCATCAAATAGTAAAGCTTCTGACTCAGATGTGGTAAAATGGATTCAAGAAAACGGT
ACAGAAATTGATAGTTCGAAGTGGAGTAGCTCCGGTTCTACGGATGATGACACCACTTCTAGCGCTTCTTTTAATATGCA
AGGTGGCGCTCAAGGAATGAATGGCACTGGTACAGGAACACTATATCAATTAAAATAA

Upstream 100 bases:

>100_bases
TAAAAAATAAATACCTCGTTTATTTCTAAATTTATTCACGTTTTTTTCATATTTGAACTCTAAAATAAAAGGTATTATCT
TATGGAAAGAAGTGAAGAAT

Downstream 100 bases:

>100_bases
AGAAGAAATGTTAAAATCCTGGTTAAAATACTAGGATTTTAACTATATTCAAGCTGTTTTATTAGCGCTTTATCATTTTG
ATGTGAGAAAATAAGTATGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 685; Mature: 685

Protein sequence:

>685_residues
MKKRIQHLDFYFVGIIVIAIFFNFYGIWNDDTVNPYYTAAVTSMVQNIHNFFYGAFDPAGFITVDKPPVALWLQAISALI
FGIHGWSVILPQALAGVGSVILLYVLVKPRFGAWAARITALIMALTPIAVAVTRTNNMDAILVFVLLLATFFLFKAVHRA
KIGWLLLSFALIGVGFNVKMLQAFMVVPAFLLFYFIATKLSWRKKLVQLVIALVLMLGVSVSWAVVVDQTAASERPYIGS
SQTNSVLELAFGYNGMERLLGQETGTGSNGNVEMGTPPSTNSTDSSNATPPTPPSGSMQDGANGGTPPQGNNGTPPTGAP
SNAANGGGNGSKMTGSTGMFGTGNAGPLRLFQTALGDQISWFLPLAIIGMLAIFLVYRNENKRIYQLTSRQKEIVFWAAW
LIPVAGFFSIAGFFHHYYLIMLAPPIALLSGVGLVALFRLYQDKENWQRFLLPAAVTLTGGLQAFFVAAYLPVLAVVIGI
AALITSIILIVLRPQPSKLTAKITALALAILLIAPTYWSLTPILYGGNSSLPEAGPQLKQSSGGGFADASVDSDLISYLQ
KNNTGETYLFGTTDATTAGPYIIKTKEAVMALGGFNGTDPTLTVKQLKQMIQAGEIKYFYLPSNSKASDSDVVKWIQENG
TEIDSSKWSSSGSTDDDTTSSASFNMQGGAQGMNGTGTGTLYQLK

Sequences:

>Translated_685_residues
MKKRIQHLDFYFVGIIVIAIFFNFYGIWNDDTVNPYYTAAVTSMVQNIHNFFYGAFDPAGFITVDKPPVALWLQAISALI
FGIHGWSVILPQALAGVGSVILLYVLVKPRFGAWAARITALIMALTPIAVAVTRTNNMDAILVFVLLLATFFLFKAVHRA
KIGWLLLSFALIGVGFNVKMLQAFMVVPAFLLFYFIATKLSWRKKLVQLVIALVLMLGVSVSWAVVVDQTAASERPYIGS
SQTNSVLELAFGYNGMERLLGQETGTGSNGNVEMGTPPSTNSTDSSNATPPTPPSGSMQDGANGGTPPQGNNGTPPTGAP
SNAANGGGNGSKMTGSTGMFGTGNAGPLRLFQTALGDQISWFLPLAIIGMLAIFLVYRNENKRIYQLTSRQKEIVFWAAW
LIPVAGFFSIAGFFHHYYLIMLAPPIALLSGVGLVALFRLYQDKENWQRFLLPAAVTLTGGLQAFFVAAYLPVLAVVIGI
AALITSIILIVLRPQPSKLTAKITALALAILLIAPTYWSLTPILYGGNSSLPEAGPQLKQSSGGGFADASVDSDLISYLQ
KNNTGETYLFGTTDATTAGPYIIKTKEAVMALGGFNGTDPTLTVKQLKQMIQAGEIKYFYLPSNSKASDSDVVKWIQENG
TEIDSSKWSSSGSTDDDTTSSASFNMQGGAQGMNGTGTGTLYQLK
>Mature_685_residues
MKKRIQHLDFYFVGIIVIAIFFNFYGIWNDDTVNPYYTAAVTSMVQNIHNFFYGAFDPAGFITVDKPPVALWLQAISALI
FGIHGWSVILPQALAGVGSVILLYVLVKPRFGAWAARITALIMALTPIAVAVTRTNNMDAILVFVLLLATFFLFKAVHRA
KIGWLLLSFALIGVGFNVKMLQAFMVVPAFLLFYFIATKLSWRKKLVQLVIALVLMLGVSVSWAVVVDQTAASERPYIGS
SQTNSVLELAFGYNGMERLLGQETGTGSNGNVEMGTPPSTNSTDSSNATPPTPPSGSMQDGANGGTPPQGNNGTPPTGAP
SNAANGGGNGSKMTGSTGMFGTGNAGPLRLFQTALGDQISWFLPLAIIGMLAIFLVYRNENKRIYQLTSRQKEIVFWAAW
LIPVAGFFSIAGFFHHYYLIMLAPPIALLSGVGLVALFRLYQDKENWQRFLLPAAVTLTGGLQAFFVAAYLPVLAVVIGI
AALITSIILIVLRPQPSKLTAKITALALAILLIAPTYWSLTPILYGGNSSLPEAGPQLKQSSGGGFADASVDSDLISYLQ
KNNTGETYLFGTTDATTAGPYIIKTKEAVMALGGFNGTDPTLTVKQLKQMIQAGEIKYFYLPSNSKASDSDVVKWIQENG
TEIDSSKWSSSGSTDDDTTSSASFNMQGGAQGMNGTGTGTLYQLK

Specific function: Unknown

COG id: COG1807

COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 39 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003342 [H]

Pfam domain/function: PF02366 PMT [H]

EC number: NA

Molecular weight: Translated: 73482; Mature: 73482

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRIQHLDFYFVGIIVIAIFFNFYGIWNDDTVNPYYTAAVTSMVQNIHNFFYGAFDPAG
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
FITVDKPPVALWLQAISALIFGIHGWSVILPQALAGVGSVILLYVLVKPRFGAWAARITA
EEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LIMALTPIAVAVTRTNNMDAILVFVLLLATFFLFKAVHRAKIGWLLLSFALIGVGFNVKM
HHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LQAFMVVPAFLLFYFIATKLSWRKKLVQLVIALVLMLGVSVSWAVVVDQTAASERPYIGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
SQTNSVLELAFGYNGMERLLGQETGTGSNGNVEMGTPPSTNSTDSSNATPPTPPSGSMQD
CCCCHHHHHHHCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
GANGGTPPQGNNGTPPTGAPSNAANGGGNGSKMTGSTGMFGTGNAGPLRLFQTALGDQIS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHH
WFLPLAIIGMLAIFLVYRNENKRIYQLTSRQKEIVFWAAWLIPVAGFFSIAGFFHHYYLI
HHHHHHHHHHHHHHHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLAPPIALLSGVGLVALFRLYQDKENWQRFLLPAAVTLTGGLQAFFVAAYLPVLAVVIGI
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
AALITSIILIVLRPQPSKLTAKITALALAILLIAPTYWSLTPILYGGNSSLPEAGPQLKQ
HHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHCCEEECCCCCCCCCCCCHHC
SSGGGFADASVDSDLISYLQKNNTGETYLFGTTDATTAGPYIIKTKEAVMALGGFNGTDP
CCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEHHHHHEECCCCCCCC
TLTVKQLKQMIQAGEIKYFYLPSNSKASDSDVVKWIQENGTEIDSSKWSSSGSTDDDTTS
CEEHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
SASFNMQGGAQGMNGTGTGTLYQLK
CCEEECCCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MKKRIQHLDFYFVGIIVIAIFFNFYGIWNDDTVNPYYTAAVTSMVQNIHNFFYGAFDPAG
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
FITVDKPPVALWLQAISALIFGIHGWSVILPQALAGVGSVILLYVLVKPRFGAWAARITA
EEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LIMALTPIAVAVTRTNNMDAILVFVLLLATFFLFKAVHRAKIGWLLLSFALIGVGFNVKM
HHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LQAFMVVPAFLLFYFIATKLSWRKKLVQLVIALVLMLGVSVSWAVVVDQTAASERPYIGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
SQTNSVLELAFGYNGMERLLGQETGTGSNGNVEMGTPPSTNSTDSSNATPPTPPSGSMQD
CCCCHHHHHHHCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
GANGGTPPQGNNGTPPTGAPSNAANGGGNGSKMTGSTGMFGTGNAGPLRLFQTALGDQIS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHH
WFLPLAIIGMLAIFLVYRNENKRIYQLTSRQKEIVFWAAWLIPVAGFFSIAGFFHHYYLI
HHHHHHHHHHHHHHHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLAPPIALLSGVGLVALFRLYQDKENWQRFLLPAAVTLTGGLQAFFVAAYLPVLAVVIGI
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
AALITSIILIVLRPQPSKLTAKITALALAILLIAPTYWSLTPILYGGNSSLPEAGPQLKQ
HHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHCCEEECCCCCCCCCCCCHHC
SSGGGFADASVDSDLISYLQKNNTGETYLFGTTDATTAGPYIIKTKEAVMALGGFNGTDP
CCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEHHHHHEECCCCCCCC
TLTVKQLKQMIQAGEIKYFYLPSNSKASDSDVVKWIQENGTEIDSSKWSSSGSTDDDTTS
CEEHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
SASFNMQGGAQGMNGTGTGTLYQLK
CCEEECCCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]