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The map label for this gene is ytcD [H]

Identifier: 226223490

GI number: 226223490

Start: 910871

End: 911224

Strand: Reverse

Name: ytcD [H]

Synonym: Lm4b_00889

Alternate gene names: 226223490

Gene position: 911224-910871 (Counterclockwise)

Preceding gene: 226223500

Following gene: 226223487

Centisome position: 31.28

GC content: 40.11

Gene sequence:

>354_bases
ATGACTAAAGTATATAATATCGGCGTCGAAGCTACACTAGAAGTTATAGGCGGAAAATGGAAACCAGTCATCCTTTGCCA
TTTACGCGAAGGCAAAAAACGAACTGGCGAATTAAAACGACTCATCCCCAACATCACACAAAAAATGCTCACACAACAAT
TGCGCGAGCTGGAAAAATCCGGGGTTATTGTCCGCAAAGTATATGAACAAATCCCACCAAAAGTCGAGTATTCATTGAGT
GAATACGGCGAATCGTTGTCGGAGATTTTGAACAAACTTTGCTTATGGGGCGAGAATCATGTGGATCTTTTGCTCACTAA
GAATGAAGATATTGTTTTGTTGAAACGAGATTAA

Upstream 100 bases:

>100_bases
TGTTTCGTTCTGTTATACAGTATCTTATATACCGTACAGAATAACAAGAAGGTACTTAAAAGTCATATAGATACTAAAAA
GTGCCTATAGGAGGATTACG

Downstream 100 bases:

>100_bases
TAGAAAAATAGCCACCTCTCGGGTGGCTATTTTTAATGATTCCCTATACTTAATATCCCTGAATCAATTTCTTCTCCATC
TAAAAACCAATACCTATGAT

Product: YtcD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MTKVYNIGVEATLEVIGGKWKPVILCHLREGKKRTGELKRLIPNITQKMLTQQLRELEKSGVIVRKVYEQIPPKVEYSLS
EYGESLSEILNKLCLWGENHVDLLLTKNEDIVLLKRD

Sequences:

>Translated_117_residues
MTKVYNIGVEATLEVIGGKWKPVILCHLREGKKRTGELKRLIPNITQKMLTQQLRELEKSGVIVRKVYEQIPPKVEYSLS
EYGESLSEILNKLCLWGENHVDLLLTKNEDIVLLKRD
>Mature_116_residues
TKVYNIGVEATLEVIGGKWKPVILCHLREGKKRTGELKRLIPNITQKMLTQQLRELEKSGVIVRKVYEQIPPKVEYSLSE
YGESLSEILNKLCLWGENHVDLLLTKNEDIVLLKRD

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=98, Percent_Identity=39.7959183673469, Blast_Score=72, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13501; Mature: 13370

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVYNIGVEATLEVIGGKWKPVILCHLREGKKRTGELKRLIPNITQKMLTQQLRELEKS
CCEEEECCHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GVIVRKVYEQIPPKVEYSLSEYGESLSEILNKLCLWGENHVDLLLTKNEDIVLLKRD
CHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECC
>Mature Secondary Structure 
TKVYNIGVEATLEVIGGKWKPVILCHLREGKKRTGELKRLIPNITQKMLTQQLRELEKS
CEEEECCHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GVIVRKVYEQIPPKVEYSLSEYGESLSEILNKLCLWGENHVDLLLTKNEDIVLLKRD
CHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]