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The map label for this gene is 226223442

Identifier: 226223442

GI number: 226223442

Start: 850529

End: 850918

Strand: Reverse

Name: 226223442

Synonym: Lm4b_00840

Alternate gene names: NA

Gene position: 850918-850529 (Counterclockwise)

Preceding gene: 226223448

Following gene: 226223437

Centisome position: 29.21

GC content: 41.79

Gene sequence:

>390_bases
GTGCAACAAACAATCAAAGAAGCGTCCGAACACACGGGTTTAAGCGCCCATACGATTCGCTATTATGAACGAGAAGGATT
AATCCCTTTTCTAGCACGCGATAAAAATAATAACCGGATTTTTGATAATGATGCCCTTCACTGGCTTGAATTACTCACCT
GTTTACGCGTCACCGGAATGCCCCTTGCGAAACAAAAAGAAATTGTTGAACTAACTAAAGGCGGTGACGGTACTGTCTCC
GAACGCATCGCTGTACTGAAAGAACATCAACAAGATATGTACCGCCGGCAAGCAGAGCTAGACCGAGCATTTAAAAAAAT
CGAGAAAAAATTAGCTTGTTACGAAGAGTTAGAACAAGCAGTAAATAAAAGTGTGGACCAGTTTAGCTAA

Upstream 100 bases:

>100_bases
TAATAACACGTTTACTATACACCTTAGAGTATACTCAAAGGCAAACATTTGGCTTTTCGATTTTCAAGGTGCTATTATTA
AGAAAAAAGAGGTGGTTTTA

Downstream 100 bases:

>100_bases
CTGATCCACACTTTTTTATAGTTGTTTTTTCTTTTTCCGATGTCTTTTAATAAGATAAATAAGTAGACCAATGATTGCGA
CAAGTAGAATCCCACCAACA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MQQTIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDNDALHWLELLTCLRVTGMPLAKQKEIVELTKGGDGTVS
ERIAVLKEHQQDMYRRQAELDRAFKKIEKKLACYEELEQAVNKSVDQFS

Sequences:

>Translated_129_residues
MQQTIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDNDALHWLELLTCLRVTGMPLAKQKEIVELTKGGDGTVS
ERIAVLKEHQQDMYRRQAELDRAFKKIEKKLACYEELEQAVNKSVDQFS
>Mature_129_residues
MQQTIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDNDALHWLELLTCLRVTGMPLAKQKEIVELTKGGDGTVS
ERIAVLKEHQQDMYRRQAELDRAFKKIEKKLACYEELEQAVNKSVDQFS

Specific function: Unknown

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 14980; Mature: 14980

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQTIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDNDALHWLELLTCLRVTGM
CCHHHHHHHHHCCCCHHHHHHHHHCCCCHHEECCCCCCEECCCHHHHHHHHHHHHHHCCC
PLAKQKEIVELTKGGDGTVSERIAVLKEHQQDMYRRQAELDRAFKKIEKKLACYEELEQA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNKSVDQFS
HHHHHHCCC
>Mature Secondary Structure
MQQTIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDNDALHWLELLTCLRVTGM
CCHHHHHHHHHCCCCHHHHHHHHHCCCCHHEECCCCCCEECCCHHHHHHHHHHHHHHCCC
PLAKQKEIVELTKGGDGTVSERIAVLKEHQQDMYRRQAELDRAFKKIEKKLACYEELEQA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNKSVDQFS
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]