Definition | Listeria monocytogenes Clip81459, complete genome. |
---|---|
Accession | NC_012488 |
Length | 2,912,690 |
Click here to switch to the map view.
The map label for this gene is 226223441
Identifier: 226223441
GI number: 226223441
Start: 849851
End: 850513
Strand: Direct
Name: 226223441
Synonym: Lm4b_00839
Alternate gene names: NA
Gene position: 849851-850513 (Clockwise)
Preceding gene: 226223440
Following gene: 226223443
Centisome position: 29.18
GC content: 34.39
Gene sequence:
>663_bases ATGAAAAAAATTATTTTCGCAGTGGTACTAAGTTTAGTTCTAATTCTTGCTGGATGTGCCGATGTAACCAATACAGTAAA AGTGGATAAAAAAGGGGAAGCGACCATTTCCTTTGATATCGATATTTCTTCTGTAGCAGGGATTTTTGCCTCAAGTTACT CGGATGAAGTAGAAGCTAAACTGAAAGAAGCTGGATTTACAGTAGATAAAAAATCAAATACAAGCTATCATATCGAAAAG AAACTAGATAAAAATGAAACAACGAAAAGCGATATGAAACCGGAAGATTTTGGGGTAAAAATTACCAATAGCAAAAGTTT CTTCACACAAAAAATCAAAGTAGATGCCGATATTGACATCGAAAAGATATGGAAAAAAGAAGTGGCGGATGTTCCGTTTC CAAAAGAAATTTTAAGCCAAGTTGATTATACATTTATTTTGGATTTACCGATTTCGTCAATTGGAGAGAATAATGCTAAA AGTGTGGATGGCGGGAAGCTCACTTGGGATGTGCCGCTCGACAAAAAATCCGAAATGTATTTTGAAGTCACTGTACCAAA CGTAAAAAACATTGCGATTGTTGGTGGGATTCTACTTGTCGCAATCATTGGTCTACTTATTTATCTTATTAAAAGACATC GGAAAAAGAAAAAACAACTATAA
Upstream 100 bases:
>100_bases AAGAGGCTTTATGAACGTCTAGGATTTCATGTGACTGGAGAAATCATACTTAGCGGTCATGAATATGAACATATGCAAAA ATAAGAAATGAGGCCAACCA
Downstream 100 bases:
>100_bases AAAAGTGTGGATCAGTTAGCTAAACTGGTCCACACTTTTATTTACTGCTTGTTCTAACTCTTCGTAACAAGCTAATTTTT TCTCGATTTTTTTAAATGCT
Product: hypothetical protein
Products: NA
Alternate protein names: Secreted Protein
Number of amino acids: Translated: 220; Mature: 220
Protein sequence:
>220_residues MKKIIFAVVLSLVLILAGCADVTNTVKVDKKGEATISFDIDISSVAGIFASSYSDEVEAKLKEAGFTVDKKSNTSYHIEK KLDKNETTKSDMKPEDFGVKITNSKSFFTQKIKVDADIDIEKIWKKEVADVPFPKEILSQVDYTFILDLPISSIGENNAK SVDGGKLTWDVPLDKKSEMYFEVTVPNVKNIAIVGGILLVAIIGLLIYLIKRHRKKKKQL
Sequences:
>Translated_220_residues MKKIIFAVVLSLVLILAGCADVTNTVKVDKKGEATISFDIDISSVAGIFASSYSDEVEAKLKEAGFTVDKKSNTSYHIEK KLDKNETTKSDMKPEDFGVKITNSKSFFTQKIKVDADIDIEKIWKKEVADVPFPKEILSQVDYTFILDLPISSIGENNAK SVDGGKLTWDVPLDKKSEMYFEVTVPNVKNIAIVGGILLVAIIGLLIYLIKRHRKKKKQL >Mature_220_residues MKKIIFAVVLSLVLILAGCADVTNTVKVDKKGEATISFDIDISSVAGIFASSYSDEVEAKLKEAGFTVDKKSNTSYHIEK KLDKNETTKSDMKPEDFGVKITNSKSFFTQKIKVDADIDIEKIWKKEVADVPFPKEILSQVDYTFILDLPISSIGENNAK SVDGGKLTWDVPLDKKSEMYFEVTVPNVKNIAIVGGILLVAIIGLLIYLIKRHRKKKKQL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24460; Mature: 24460
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIIFAVVLSLVLILAGCADVTNTVKVDKKGEATISFDIDISSVAGIFASSYSDEVEAK CHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCHHHHHHHHHHCCCHHHHHH LKEAGFTVDKKSNTSYHIEKKLDKNETTKSDMKPEDFGVKITNSKSFFTQKIKVDADIDI HHHCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCH EKIWKKEVADVPFPKEILSQVDYTFILDLPISSIGENNAKSVDGGKLTWDVPLDKKSEMY HHHHHHHHCCCCCCHHHHHHCCEEEEEECCHHHCCCCCCCCCCCCEEEEECCCCCCCCEE FEVTVPNVKNIAIVGGILLVAIIGLLIYLIKRHRKKKKQL EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKKIIFAVVLSLVLILAGCADVTNTVKVDKKGEATISFDIDISSVAGIFASSYSDEVEAK CHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCHHHHHHHHHHCCCHHHHHH LKEAGFTVDKKSNTSYHIEKKLDKNETTKSDMKPEDFGVKITNSKSFFTQKIKVDADIDI HHHCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCH EKIWKKEVADVPFPKEILSQVDYTFILDLPISSIGENNAKSVDGGKLTWDVPLDKKSEMY HHHHHHHHCCCCCCHHHHHHCCEEEEEECCHHHCCCCCCCCCCCCEEEEECCCCCCCCEE FEVTVPNVKNIAIVGGILLVAIIGLLIYLIKRHRKKKKQL EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA