Definition | Listeria monocytogenes Clip81459, complete genome. |
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Accession | NC_012488 |
Length | 2,912,690 |
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The map label for this gene is inlJ [H]
Identifier: 226223406
GI number: 226223406
Start: 817405
End: 819585
Strand: Direct
Name: inlJ [H]
Synonym: Lm4b_00804
Alternate gene names: 226223406
Gene position: 817405-819585 (Clockwise)
Preceding gene: 226223405
Following gene: 226223409
Centisome position: 28.06
GC content: 35.08
Gene sequence:
>2181_bases TTGAAAAAATTTGTTTTAATTTTTATTTGTTTTCTCACGCTAACAACCATTGTCCCTTGGAATACGCTCGAAACGAAGGC GGCATCCACTTCTTGGCTTGAACAAGAATTAGATGGTAATGAAGCCTTTATCACTGAAACAGAAAGAGTCTTGTCAAAAA ATCGTGAAGATATTACACTCGCAGATTTAGAAACAATACAAGAATTAGATATTTATGGTGATGCTTCATCAATACCCGAC AAAATTTCTGATTATAAGAATCTCAATACTTTACTTGCCCTTAATGGAACGATTTCAGAAATTCCAACTAGTATCACTAA ACTAACAAAACTAACAAGAATCAACGTAGACAATAATAATTTTCAAGAATTTCCGATGATTCTATTACAGATGCCTTCTC TAAGTTCTATTGAGATAAATAGAAATAAAATTAAAGAGATTCCTTCAGAAATAACCACATTATCCCCTCATTTAGGATCG CTGGATGTACGCTATAATGAGCTAATTACGCTTCCGGATAATATCTTCACTACTGAGTGGGAAAGTAAGCTCTCATTACT AACTACAGGAAATCAATTAGTTTCTGACATTCCTGCTGATTGGTTAGATAATTTTAATCAAGCAGATAACATGCTCGAAT TTTACAACAATCCACCAAATGATTATCATCAAAAACAAGACCAGCTAACGTATAGTGGAGCAAGAATTGAAGTCCCATTA AATACAGATCTAAAAACATTAACTCCTGATAAAACAAAACTGGGCTTAAAATCAGGCAGAACGTTATTTGAACAACATGA ATTTATGTATTATGATGACGGGACCTCTAATAACATTCTAACTAACGGTGTTGCTACTGCCACAGGAAATGGCTATATAA CAATCAAAAGTACTTTATCAACCAATTCCAACCCTTTTGCAAAAGTACGAGTTCCTATCACAGTAACGCCCCCAGTAAAA GGAGGAGATGTTACCGTTCAATATAAAGACACAACTGGAGTAGTGTTAGCAGACTCCATTACTTTATCCGGAAATGTGGG CGAAAATTATACGACAACAGCTAAAACAATTGACGGCTATTCTTTAACAACTACACCAACCAATGCTAATGGAACTTTTT CAACAAACCCACAAACTGTCACATATACTTATAAAAAAGACCCTATAGCGCAACCAGTTACTGTTAATTATATTGATACA GATGGAAAAACAATTGCTCCCACTGAAACATTAAGCGGAAATGTGGGCGAAAATTATACGACAACTGCTAAAACAATTGA CGGCTATTCTTTAACAACTACACCTGCCAATGCTAATGGAACTTTTTCAACAAACCCACAAACTGTCACATATACTTACA CAAAAGATCCTATAGCGCAACCAGTTACTGTTAATTATATCGATACAGATGGAAAAACAATTGCTCCTTCTGAAACCTTA ACCGGAAATATTAGTGAAAACTATACGACAACAGCTAAAACAATTGACGGCTATTCTTTAACAACTACACCTGCCAATGC CAAGGGGACTTTTTCGACAGAACCTCAAATAATTAATTATATCTATGCGAAAAACGCTGAGACAGCCCAACCTATTACCG TTAATTATAGAAACTCTACAGGTCAAAAAATCGCGAAAAGTGAGGTTTTAACTGGTAATATCGGAGAATCTTACTCAACT CAACCGAAAACAATTGCTGGTTACACACTCACAACAATACCTCCAAATGCAAAAGGAACCTTTACAACAAATGCGCAAAC AGTAACTTATATGTATACGCCGATTGCTATTTCCGCCTTACCAGTGACAGTGAACTATTTAGATGAAAATGGTAAAGAAA TTGCTGACTCTGTAGTTCTAAATGGTCGTGTGGGAGAGGCTTATAATACACTAGCTAAAGAAATAGATGGCTACACGTTG ATAAAAACTCCTACAAATTCTAATGGTGTGTTTTCGGCGGAAGCACAATCAATCGATTATATCTACCGTAAAAATAAACC AGTAGTAATAGTAAATCCACCAATCAAAAACCCGATTATTAAAATAGATTCTAGTACCAACGTAATAAAAGAAGAAACGT CTGTCTTACCAAAAACTGGCGATTCCAATCCATACAATGACTTTTTGGCAGGAATTCTACTATTATCTTCAGCGATGTTT CTTTGGAAAAATCATAAATAA
Upstream 100 bases:
>100_bases ATAATAGTATTTTTGTTAATACATTGGCTTGTTGTTTTGTATATTATAATTATTCTAAATCAAGTTGCTAAAATACAAGA TACAAGGAGTGCTATATTTT
Downstream 100 bases:
>100_bases AAACCGAAAAGACACCTTTCTTTTCGGCTGAGATTGTAGGCGAAGTATAAAAATACTTTGCCTACAGTTTTTTTATTATA ATGAAATGAAGTGAAGTGGA
Product: cell surface protein (LPXTG motif)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 726; Mature: 726
Protein sequence:
>726_residues MKKFVLIFICFLTLTTIVPWNTLETKAASTSWLEQELDGNEAFITETERVLSKNREDITLADLETIQELDIYGDASSIPD KISDYKNLNTLLALNGTISEIPTSITKLTKLTRINVDNNNFQEFPMILLQMPSLSSIEINRNKIKEIPSEITTLSPHLGS LDVRYNELITLPDNIFTTEWESKLSLLTTGNQLVSDIPADWLDNFNQADNMLEFYNNPPNDYHQKQDQLTYSGARIEVPL NTDLKTLTPDKTKLGLKSGRTLFEQHEFMYYDDGTSNNILTNGVATATGNGYITIKSTLSTNSNPFAKVRVPITVTPPVK GGDVTVQYKDTTGVVLADSITLSGNVGENYTTTAKTIDGYSLTTTPTNANGTFSTNPQTVTYTYKKDPIAQPVTVNYIDT DGKTIAPTETLSGNVGENYTTTAKTIDGYSLTTTPANANGTFSTNPQTVTYTYTKDPIAQPVTVNYIDTDGKTIAPSETL TGNISENYTTTAKTIDGYSLTTTPANAKGTFSTEPQIINYIYAKNAETAQPITVNYRNSTGQKIAKSEVLTGNIGESYST QPKTIAGYTLTTIPPNAKGTFTTNAQTVTYMYTPIAISALPVTVNYLDENGKEIADSVVLNGRVGEAYNTLAKEIDGYTL IKTPTNSNGVFSAEAQSIDYIYRKNKPVVIVNPPIKNPIIKIDSSTNVIKEETSVLPKTGDSNPYNDFLAGILLLSSAMF LWKNHK
Sequences:
>Translated_726_residues MKKFVLIFICFLTLTTIVPWNTLETKAASTSWLEQELDGNEAFITETERVLSKNREDITLADLETIQELDIYGDASSIPD KISDYKNLNTLLALNGTISEIPTSITKLTKLTRINVDNNNFQEFPMILLQMPSLSSIEINRNKIKEIPSEITTLSPHLGS LDVRYNELITLPDNIFTTEWESKLSLLTTGNQLVSDIPADWLDNFNQADNMLEFYNNPPNDYHQKQDQLTYSGARIEVPL NTDLKTLTPDKTKLGLKSGRTLFEQHEFMYYDDGTSNNILTNGVATATGNGYITIKSTLSTNSNPFAKVRVPITVTPPVK GGDVTVQYKDTTGVVLADSITLSGNVGENYTTTAKTIDGYSLTTTPTNANGTFSTNPQTVTYTYKKDPIAQPVTVNYIDT DGKTIAPTETLSGNVGENYTTTAKTIDGYSLTTTPANANGTFSTNPQTVTYTYTKDPIAQPVTVNYIDTDGKTIAPSETL TGNISENYTTTAKTIDGYSLTTTPANAKGTFSTEPQIINYIYAKNAETAQPITVNYRNSTGQKIAKSEVLTGNIGESYST QPKTIAGYTLTTIPPNAKGTFTTNAQTVTYMYTPIAISALPVTVNYLDENGKEIADSVVLNGRVGEAYNTLAKEIDGYTL IKTPTNSNGVFSAEAQSIDYIYRKNKPVVIVNPPIKNPIIKIDSSTNVIKEETSVLPKTGDSNPYNDFLAGILLLSSAMF LWKNHK >Mature_726_residues MKKFVLIFICFLTLTTIVPWNTLETKAASTSWLEQELDGNEAFITETERVLSKNREDITLADLETIQELDIYGDASSIPD KISDYKNLNTLLALNGTISEIPTSITKLTKLTRINVDNNNFQEFPMILLQMPSLSSIEINRNKIKEIPSEITTLSPHLGS LDVRYNELITLPDNIFTTEWESKLSLLTTGNQLVSDIPADWLDNFNQADNMLEFYNNPPNDYHQKQDQLTYSGARIEVPL NTDLKTLTPDKTKLGLKSGRTLFEQHEFMYYDDGTSNNILTNGVATATGNGYITIKSTLSTNSNPFAKVRVPITVTPPVK GGDVTVQYKDTTGVVLADSITLSGNVGENYTTTAKTIDGYSLTTTPTNANGTFSTNPQTVTYTYKKDPIAQPVTVNYIDT DGKTIAPTETLSGNVGENYTTTAKTIDGYSLTTTPANANGTFSTNPQTVTYTYTKDPIAQPVTVNYIDTDGKTIAPSETL TGNISENYTTTAKTIDGYSLTTTPANAKGTFSTEPQIINYIYAKNAETAQPITVNYRNSTGQKIAKSEVLTGNIGESYST QPKTIAGYTLTTIPPNAKGTFTTNAQTVTYMYTPIAISALPVTVNYLDENGKEIADSVVLNGRVGEAYNTLAKEIDGYTL IKTPTNSNGVFSAEAQSIDYIYRKNKPVVIVNPPIKNPIIKIDSSTNVIKEETSVLPKTGDSNPYNDFLAGILLLSSAMF LWKNHK
Specific function: Involved in several steps of L.monocytogenes infection [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall; Peptidoglycan-anchor (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 5 MucBP domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009459 - InterPro: IPR019931 - InterPro: IPR001899 [H]
Pfam domain/function: PF06458 MucBP [H]
EC number: NA
Molecular weight: Translated: 79555; Mature: 79555
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKFVLIFICFLTLTTIVPWNTLETKAASTSWLEQELDGNEAFITETERVLSKNREDITL CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHHHCCCCCEEE ADLETIQELDIYGDASSIPDKISDYKNLNTLLALNGTISEIPTSITKLTKLTRINVDNNN HHHHHHHHHEECCCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHEEEEEEECCCCC FQEFPMILLQMPSLSSIEINRNKIKEIPSEITTLSPHLGSLDVRYNELITLPDNIFTTEW HHHHCEEEEECCCCCEEEECHHHHHHHHHHHHCCCCCCCCEEEEECEEEECCCCEEECCC ESKLSLLTTGNQLVSDIPADWLDNFNQADNMLEFYNNPPNDYHQKQDQLTYSGARIEVPL CCCEEEEECCCHHHHHCCHHHHHCHHHHHHHHHHHCCCCHHHHHHHHCEEECCCEEEEEC NTDLKTLTPDKTKLGLKSGRTLFEQHEFMYYDDGTSNNILTNGVATATGNGYITIKSTLS CCCCCCCCCCHHHCCHHCCCHHHHCCCEEEEECCCCCCEEECCEEEECCCEEEEEEEEEC TNSNPFAKVRVPITVTPPVKGGDVTVQYKDTTGVVLADSITLSGNVGENYTTTAKTIDGY CCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCEEEEEEEECCE SLTTTPTNANGTFSTNPQTVTYTYKKDPIAQPVTVNYIDTDGKTIAPTETLSGNVGENYT EEEECCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEEECCCCEECCCHHCCCCCCCCEE TTAKTIDGYSLTTTPANANGTFSTNPQTVTYTYTKDPIAQPVTVNYIDTDGKTIAPSETL EEEEEECCEEEEECCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEEECCCCEECCCCCE TGNISENYTTTAKTIDGYSLTTTPANAKGTFSTEPQIINYIYAKNAETAQPITVNYRNST ECCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCC GQKIAKSEVLTGNIGESYSTQPKTIAGYTLTTIPPNAKGTFTTNAQTVTYMYTPIAISAL CCHHHHCCEEECCCCCCCCCCCCEEECEEEEECCCCCCCEEECCCEEEEEEECCEEEEEE PVTVNYLDENGKEIADSVVLNGRVGEAYNTLAKEIDGYTLIKTPTNSNGVFSAEAQSIDY EEEEEEECCCCHHHHHHEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCEEEECCCCEEE IYRKNKPVVIVNPPIKNPIIKIDSSTNVIKEETSVLPKTGDSNPYNDFLAGILLLSSAMF EEECCCCEEEECCCCCCCEEEECCCCCEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH LWKNHK EEECCC >Mature Secondary Structure MKKFVLIFICFLTLTTIVPWNTLETKAASTSWLEQELDGNEAFITETERVLSKNREDITL CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHHHCCCCCEEE ADLETIQELDIYGDASSIPDKISDYKNLNTLLALNGTISEIPTSITKLTKLTRINVDNNN HHHHHHHHHEECCCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHEEEEEEECCCCC FQEFPMILLQMPSLSSIEINRNKIKEIPSEITTLSPHLGSLDVRYNELITLPDNIFTTEW HHHHCEEEEECCCCCEEEECHHHHHHHHHHHHCCCCCCCCEEEEECEEEECCCCEEECCC ESKLSLLTTGNQLVSDIPADWLDNFNQADNMLEFYNNPPNDYHQKQDQLTYSGARIEVPL CCCEEEEECCCHHHHHCCHHHHHCHHHHHHHHHHHCCCCHHHHHHHHCEEECCCEEEEEC NTDLKTLTPDKTKLGLKSGRTLFEQHEFMYYDDGTSNNILTNGVATATGNGYITIKSTLS CCCCCCCCCCHHHCCHHCCCHHHHCCCEEEEECCCCCCEEECCEEEECCCEEEEEEEEEC TNSNPFAKVRVPITVTPPVKGGDVTVQYKDTTGVVLADSITLSGNVGENYTTTAKTIDGY CCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCEEEEEEEECCE SLTTTPTNANGTFSTNPQTVTYTYKKDPIAQPVTVNYIDTDGKTIAPTETLSGNVGENYT EEEECCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEEECCCCEECCCHHCCCCCCCCEE TTAKTIDGYSLTTTPANANGTFSTNPQTVTYTYTKDPIAQPVTVNYIDTDGKTIAPSETL EEEEEECCEEEEECCCCCCCEECCCCCEEEEEECCCCCCCCEEEEEEECCCCEECCCCCE TGNISENYTTTAKTIDGYSLTTTPANAKGTFSTEPQIINYIYAKNAETAQPITVNYRNST ECCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCC GQKIAKSEVLTGNIGESYSTQPKTIAGYTLTTIPPNAKGTFTTNAQTVTYMYTPIAISAL CCHHHHCCEEECCCCCCCCCCCCEEECEEEEECCCCCCCEEECCCEEEEEEECCEEEEEE PVTVNYLDENGKEIADSVVLNGRVGEAYNTLAKEIDGYTLIKTPTNSNGVFSAEAQSIDY EEEEEEECCCCHHHHHHEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCEEEECCCCEEE IYRKNKPVVIVNPPIKNPIIKIDSSTNVIKEETSVLPKTGDSNPYNDFLAGILLLSSAMF EEECCCCEEEECCCCCCCEEEECCCCCEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH LWKNHK EEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA