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The map label for this gene is araR [H]

Identifier: 226223388

GI number: 226223388

Start: 795901

End: 797019

Strand: Reverse

Name: araR [H]

Synonym: Lm4b_00786

Alternate gene names: 226223388

Gene position: 797019-795901 (Counterclockwise)

Preceding gene: 226223391

Following gene: 226223364

Centisome position: 27.36

GC content: 34.85

Gene sequence:

>1119_bases
ATGAAAAAACTACTATATCAAAAAGTCTATGATCAGCTTAAACTGTCGATTCAAGAAGGTAAGATTCCTGTTGGCAGCAA
AATGCCTGCAGAAAATGAATTGATGGCTCAATTTGATGTGAGCAGTATTACGTTAAAAAAGGCGCTAGAATTATTAAAGA
AAGATGGTTATATTTCAAGACGCCCTCGGGTTGGTACATTTGTAATTAATGCTTCGCCAGTTAGCGAACAAATAGAAACT
AGAATGTTTGATAAACCCCTTTTTGGTTGTATTATGACAAATTTTGACGATACTTTTGGTACTACTTTATTATCTGGGAT
GTTAGAGCACAGTGACTCTAAAGCTCATATTATTGTAAAAAAATCACTTGGCGATACAGAGCGAGAAGAAGAAATTTTGC
AAGAGTTTATTGAAATGAATGTTGCAGGGATACTGATTTTACCTGCTAGTTCGAAGTTTGTTTCACCGACCTTACTAGAA
CTTGCTTCTCAAAAATTTCCTTTAGTTGTCATAGATCGTACATTAGAAGGCTTACCAATATCTTCTATTAGTTCAGATAA
TACAGAAGCTGGTCGAATTATTACAGAAAAATTATTTGAACTTGGGCATAAGCATATTGGAATGATAACATCTACTAGTC
CAGTCTCTACGCTTGATAGTCGAGTAAACGGATTTATTCGAGGGCATGCATCTTTTCACACAGCTTTTCACTCTGATTAT
GTTTTTCGCGAAATTGAATCAGTAATGCCAAATTCAACCGTTTCCATCCAAACAGATATTGATAAAATTGCACATTTTTT
GAATACACATTCTGAAATCACGGCACTTGTAGCAACTGAATACAATATTGCTCTTTTGATAAAACAAGCATGCAACAAGT
TAGGGAAATCCATTCCTGGTGATTTATCCGTTGTTTGTTTTGATCATCCAGATAATTTTTTTGATAACTCTGCCTTCCAG
TTTACACATATTAAACAAGCCCAATACGAAATAGGCGTGAAAGCAGTTGACATGCTTTTAAATCAAGTGCTAAAACCAGA
TACTATAAACAAAGAAACTCTACCTCCAATGCTTATAGAAGGAGATTCGGTCAAAATGCTAAAAAGCACCTCCAAGTAG

Upstream 100 bases:

>100_bases
AGTTTGTAAGGAGATTTCCACTTTTTTATCGTAATTAGTTTACAATAAGGCCAAAATTAAATATAATTAATATTATAAAA
TATATTTAATGGGTGAGTGA

Downstream 100 bases:

>100_bases
GAGGTGCTTTTTTATCGTTCTAGTTTTGCCGCCATTTCAAGTGCGATCATTCCACTTAATTCTGCTGAATAAGGAATTTT
CCCAGAGGGATTTTCTTTCC

Product: transcriptional regulator (LacI family)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MKKLLYQKVYDQLKLSIQEGKIPVGSKMPAENELMAQFDVSSITLKKALELLKKDGYISRRPRVGTFVINASPVSEQIET
RMFDKPLFGCIMTNFDDTFGTTLLSGMLEHSDSKAHIIVKKSLGDTEREEEILQEFIEMNVAGILILPASSKFVSPTLLE
LASQKFPLVVIDRTLEGLPISSISSDNTEAGRIITEKLFELGHKHIGMITSTSPVSTLDSRVNGFIRGHASFHTAFHSDY
VFREIESVMPNSTVSIQTDIDKIAHFLNTHSEITALVATEYNIALLIKQACNKLGKSIPGDLSVVCFDHPDNFFDNSAFQ
FTHIKQAQYEIGVKAVDMLLNQVLKPDTINKETLPPMLIEGDSVKMLKSTSK

Sequences:

>Translated_372_residues
MKKLLYQKVYDQLKLSIQEGKIPVGSKMPAENELMAQFDVSSITLKKALELLKKDGYISRRPRVGTFVINASPVSEQIET
RMFDKPLFGCIMTNFDDTFGTTLLSGMLEHSDSKAHIIVKKSLGDTEREEEILQEFIEMNVAGILILPASSKFVSPTLLE
LASQKFPLVVIDRTLEGLPISSISSDNTEAGRIITEKLFELGHKHIGMITSTSPVSTLDSRVNGFIRGHASFHTAFHSDY
VFREIESVMPNSTVSIQTDIDKIAHFLNTHSEITALVATEYNIALLIKQACNKLGKSIPGDLSVVCFDHPDNFFDNSAFQ
FTHIKQAQYEIGVKAVDMLLNQVLKPDTINKETLPPMLIEGDSVKMLKSTSK
>Mature_372_residues
MKKLLYQKVYDQLKLSIQEGKIPVGSKMPAENELMAQFDVSSITLKKALELLKKDGYISRRPRVGTFVINASPVSEQIET
RMFDKPLFGCIMTNFDDTFGTTLLSGMLEHSDSKAHIIVKKSLGDTEREEEILQEFIEMNVAGILILPASSKFVSPTLLE
LASQKFPLVVIDRTLEGLPISSISSDNTEAGRIITEKLFELGHKHIGMITSTSPVSTLDSRVNGFIRGHASFHTAFHSDY
VFREIESVMPNSTVSIQTDIDKIAHFLNTHSEITALVATEYNIALLIKQACNKLGKSIPGDLSVVCFDHPDNFFDNSAFQ
FTHIKQAQYEIGVKAVDMLLNQVLKPDTINKETLPPMLIEGDSVKMLKSTSK

Specific function: Transcriptional repressor of the arabinose utilization genes [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR001761
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 41398; Mature: 41398

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLYQKVYDQLKLSIQEGKIPVGSKMPAENELMAQFDVSSITLKKALELLKKDGYISR
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCCC
RPRVGTFVINASPVSEQIETRMFDKPLFGCIMTNFDDTFGTTLLSGMLEHSDSKAHIIVK
CCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEE
KSLGDTEREEEILQEFIEMNVAGILILPASSKFVSPTLLELASQKFPLVVIDRTLEGLPI
CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCC
SSISSDNTEAGRIITEKLFELGHKHIGMITSTSPVSTLDSRVNGFIRGHASFHTAFHSDY
CCCCCCCCCHHHHHHHHHHHCCCHHEEEEECCCCHHHHHHHHHHEEECCHHHHHHHHHHH
VFREIESVMPNSTVSIQTDIDKIAHFLNTHSEITALVATEYNIALLIKQACNKLGKSIPG
HHHHHHHHCCCCEEEEEECHHHHHHHHCCHHHHEEEEEECCHHHHHHHHHHHHHCCCCCC
DLSVVCFDHPDNFFDNSAFQFTHIKQAQYEIGVKAVDMLLNQVLKPDTINKETLPPMLIE
CEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEC
GDSVKMLKSTSK
CCCHHHHHCCCC
>Mature Secondary Structure
MKKLLYQKVYDQLKLSIQEGKIPVGSKMPAENELMAQFDVSSITLKKALELLKKDGYISR
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCCCC
RPRVGTFVINASPVSEQIETRMFDKPLFGCIMTNFDDTFGTTLLSGMLEHSDSKAHIIVK
CCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEE
KSLGDTEREEEILQEFIEMNVAGILILPASSKFVSPTLLELASQKFPLVVIDRTLEGLPI
CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCC
SSISSDNTEAGRIITEKLFELGHKHIGMITSTSPVSTLDSRVNGFIRGHASFHTAFHSDY
CCCCCCCCCHHHHHHHHHHHCCCHHEEEEECCCCHHHHHHHHHHEEECCHHHHHHHHHHH
VFREIESVMPNSTVSIQTDIDKIAHFLNTHSEITALVATEYNIALLIKQACNKLGKSIPG
HHHHHHHHCCCCEEEEEECHHHHHHHHCCHHHHEEEEEECCHHHHHHHHHHHHHCCCCCC
DLSVVCFDHPDNFFDNSAFQFTHIKQAQYEIGVKAVDMLLNQVLKPDTINKETLPPMLIE
CEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEC
GDSVKMLKSTSK
CCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA