Click here to switch to the map view.

The map label for this gene is 226223273

Identifier: 226223273

GI number: 226223273

Start: 688779

End: 689420

Strand: Direct

Name: 226223273

Synonym: Lm4b_00670

Alternate gene names: NA

Gene position: 688779-689420 (Clockwise)

Preceding gene: 226223272

Following gene: 226223274

Centisome position: 23.65

GC content: 33.8

Gene sequence:

>642_bases
ATGGAAAAACAAACATATGAAAAATTAGCATATTATACAATCAAAGAAAAAATTCTCAGTGGAAAGCTTCATGTAGGTCA
ACATATTTCAGAAGCTGGTATTGCAAAAGAATTATCTATTAGTCGAACGCCAGTCAGAAAAGCAATTGCGGTTTTAGTAT
CCGAAGAGTTAATCGAATACGAGCTGAACCGGGGGGCAATTGTGATTGAAAGCAGCATGAGTGCAGGACGTTTTATTGAA
TTATTAGAAATGGCCGAAATCCTTGTCGTACAAACGATTGAAAAATGTAAAAATAAAAATTTAACCTATAAACCAGAGCA
AGGTAATGCGCTATTAGAGGAAATGCGCGAAATTCAAAAAGAAGAAGATGTGGAGGCTTATCTGTCGTTACTTAGCAAAT
GGTTGTTGCAATTTGTTGCGCAGTTAGCTAATAGTTATGCTGAAGATATTGTTAGGAAAATGAAGCGAGATTTCTTTAAT
AAAGCGCAAAAAGATATTAAAATGATTCCTGTGCTCTTGGAAGAAGAAACAATGGAAACGTTAGAACAGTTAACTTACTA
CATGGTAGAAAAGAAACACGATTTAGCAAAAGAGGTAATACAAAAATTAGTGAATTTGTATATTATCCGTACATTTAGAT
AG

Upstream 100 bases:

>100_bases
TTGCATTAATTCTTTTATTTACGCTTTTAATTACAACGGGAGTAACTGTCATTTTTTGGCGTAGAAAATACTTTTAATAT
ATAGAAAACGAGGGATGAGC

Downstream 100 bases:

>100_bases
TATTTCTAAAGGTAAATTGCTTAAAAACAGGAGGTGCTTTTGATGCGGAAAGTATACGAAATATTTATTTTAGACTGGCG
CCGTCTCTTTAAAGCGCCTT

Product: transcription regulator

Products: NA

Alternate protein names: Transcription Regulator; Transcriptional Regulator; GntR Family Transcriptional Regulator

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MEKQTYEKLAYYTIKEKILSGKLHVGQHISEAGIAKELSISRTPVRKAIAVLVSEELIEYELNRGAIVIESSMSAGRFIE
LLEMAEILVVQTIEKCKNKNLTYKPEQGNALLEEMREIQKEEDVEAYLSLLSKWLLQFVAQLANSYAEDIVRKMKRDFFN
KAQKDIKMIPVLLEEETMETLEQLTYYMVEKKHDLAKEVIQKLVNLYIIRTFR

Sequences:

>Translated_213_residues
MEKQTYEKLAYYTIKEKILSGKLHVGQHISEAGIAKELSISRTPVRKAIAVLVSEELIEYELNRGAIVIESSMSAGRFIE
LLEMAEILVVQTIEKCKNKNLTYKPEQGNALLEEMREIQKEEDVEAYLSLLSKWLLQFVAQLANSYAEDIVRKMKRDFFN
KAQKDIKMIPVLLEEETMETLEQLTYYMVEKKHDLAKEVIQKLVNLYIIRTFR
>Mature_213_residues
MEKQTYEKLAYYTIKEKILSGKLHVGQHISEAGIAKELSISRTPVRKAIAVLVSEELIEYELNRGAIVIESSMSAGRFIE
LLEMAEILVVQTIEKCKNKNLTYKPEQGNALLEEMREIQKEEDVEAYLSLLSKWLLQFVAQLANSYAEDIVRKMKRDFFN
KAQKDIKMIPVLLEEETMETLEQLTYYMVEKKHDLAKEVIQKLVNLYIIRTFR

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24809; Mature: 24809

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKQTYEKLAYYTIKEKILSGKLHVGQHISEAGIAKELSISRTPVRKAIAVLVSEELIEY
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
ELNRGAIVIESSMSAGRFIELLEMAEILVVQTIEKCKNKNLTYKPEQGNALLEEMREIQK
HHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
EEDVEAYLSLLSKWLLQFVAQLANSYAEDIVRKMKRDFFNKAQKDIKMIPVLLEEETMET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEQLTYYMVEKKHDLAKEVIQKLVNLYIIRTFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEKQTYEKLAYYTIKEKILSGKLHVGQHISEAGIAKELSISRTPVRKAIAVLVSEELIEY
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
ELNRGAIVIESSMSAGRFIELLEMAEILVVQTIEKCKNKNLTYKPEQGNALLEEMREIQK
HHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
EEDVEAYLSLLSKWLLQFVAQLANSYAEDIVRKMKRDFFNKAQKDIKMIPVLLEEETMET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEQLTYYMVEKKHDLAKEVIQKLVNLYIIRTFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA