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The map label for this gene is sorC [H]

Identifier: 226223176

GI number: 226223176

Start: 588650

End: 589597

Strand: Reverse

Name: sorC [H]

Synonym: Lm4b_00573

Alternate gene names: 226223176

Gene position: 589597-588650 (Counterclockwise)

Preceding gene: 226223182

Following gene: 226223175

Centisome position: 20.24

GC content: 37.76

Gene sequence:

>948_bases
ATGAAATGGGAAGAAAAAAGAGATATGGTGAAAATCGCTACGTGGTACTATCACTACGGCTGGACCCAAGCGCAAATCGC
CAAAAAAATCGGGATTTCAAGATCCATTATCTCTAAAACTTTGCAACGCGCAAAAGACTTAGGCATTGTGGAAATCTTTA
TTAAAGACGAAACTTACTATACGGTAGATTTAGAACAAAAATTAGAAGAAAAGTTTGGTTTAGAGGAAGCGATTGTCGTT
GCAACGCACGATATGTCTGAGGAAGAAGCACTGAATTTCCTTGCCAAAGAAGCTGCCTATACACTGAGTAAAAGGATTGC
TAAAGTAAAAACTCTCGGGATTTCATGGGGGAAAACAATTCGCAAATTTGCTAATGAATTCCCATTCATCCCGCATAAAG
ACTTAACAATTATTCCGCTTATAGGTGGAATGGGCTCGAGTGATATTGATCTGCATTCCAATCAAATTTGTTATGATTTA
AAGAAAAAAATGAAATGCCACTCCAAATATTTGTATGCGCCTGCGCTCGTTGAAGATACGGAAATGAAAACCGATTTATC
CAAAAACAAATATATTAGCGAAGTATTAGAAGAAGGAAAAACGGTTGATATGGCTATTGTCGGTGTATCGAGCCCTTATA
ATCACAGCACAATGGAAGAAATCGGCTATATTAATTCTGAAGATATTGAAGAACTACGCTATAAAGATGTTGTCGGTGAT
ATTAATTCACGCTTTTTCACAGCAGACGGAAAAGAAGCAAAAACTGAGATTAACACCCATGTAATCGGTCTTAGTCTAGA
GGAGTTGAAGAACATCCCCACCGTCGTCGCACTTGCAAACGGATTACAAAAAAAAGAAGCATTAGTGGCAGCTCTTAATG
CCGGATTGATAGATGTGATTGTGATTACTGATAGAATGGCCGAATACATTCTTCAAAAAAACGACTAA

Upstream 100 bases:

>100_bases
CAACTTTTCATAAAGCAAATTCTATGATACTATTAGCATAAAAACATTTGTGACATCGTATAACTTTTGTTCCATTATGA
TGTAAATGGAGGTAAGTAGA

Downstream 100 bases:

>100_bases
AAAATAATCCTAACTATAAAATTTAAAATATCCAAAAGCTCTCTCCCGCAAAGGAATGAGCTTTTTTTATTTCTCAAAAA
ATAAAAAAAGCTAATATTTC

Product: DeoR transcriptional regulator

Products: NA

Alternate protein names: Sor operon activator [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MKWEEKRDMVKIATWYYHYGWTQAQIAKKIGISRSIISKTLQRAKDLGIVEIFIKDETYYTVDLEQKLEEKFGLEEAIVV
ATHDMSEEEALNFLAKEAAYTLSKRIAKVKTLGISWGKTIRKFANEFPFIPHKDLTIIPLIGGMGSSDIDLHSNQICYDL
KKKMKCHSKYLYAPALVEDTEMKTDLSKNKYISEVLEEGKTVDMAIVGVSSPYNHSTMEEIGYINSEDIEELRYKDVVGD
INSRFFTADGKEAKTEINTHVIGLSLEELKNIPTVVALANGLQKKEALVAALNAGLIDVIVITDRMAEYILQKND

Sequences:

>Translated_315_residues
MKWEEKRDMVKIATWYYHYGWTQAQIAKKIGISRSIISKTLQRAKDLGIVEIFIKDETYYTVDLEQKLEEKFGLEEAIVV
ATHDMSEEEALNFLAKEAAYTLSKRIAKVKTLGISWGKTIRKFANEFPFIPHKDLTIIPLIGGMGSSDIDLHSNQICYDL
KKKMKCHSKYLYAPALVEDTEMKTDLSKNKYISEVLEEGKTVDMAIVGVSSPYNHSTMEEIGYINSEDIEELRYKDVVGD
INSRFFTADGKEAKTEINTHVIGLSLEELKNIPTVVALANGLQKKEALVAALNAGLIDVIVITDRMAEYILQKND
>Mature_315_residues
MKWEEKRDMVKIATWYYHYGWTQAQIAKKIGISRSIISKTLQRAKDLGIVEIFIKDETYYTVDLEQKLEEKFGLEEAIVV
ATHDMSEEEALNFLAKEAAYTLSKRIAKVKTLGISWGKTIRKFANEFPFIPHKDLTIIPLIGGMGSSDIDLHSNQICYDL
KKKMKCHSKYLYAPALVEDTEMKTDLSKNKYISEVLEEGKTVDMAIVGVSSPYNHSTMEEIGYINSEDIEELRYKDVVGD
INSRFFTADGKEAKTEINTHVIGLSLEELKNIPTVVALANGLQKKEALVAALNAGLIDVIVITDRMAEYILQKND

Specific function: Positively regulates, in the presence of L-sorbose, and negatively regulates, in the absence of L-sorbose, the transcription of the sor operon [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=314, Percent_Identity=27.7070063694268, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87082414, Length=313, Percent_Identity=25.2396166134185, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 35684; Mature: 35684

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWEEKRDMVKIATWYYHYGWTQAQIAKKIGISRSIISKTLQRAKDLGIVEIFIKDETYY
CCCCHHHHHEEEEEEHEECCCHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEECCEEE
TVDLEQKLEEKFGLEEAIVVATHDMSEEEALNFLAKEAAYTLSKRIAKVKTLGISWGKTI
EEEHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RKFANEFPFIPHKDLTIIPLIGGMGSSDIDLHSNQICYDLKKKMKCHSKYLYAPALVEDT
HHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCC
EMKTDLSKNKYISEVLEEGKTVDMAIVGVSSPYNHSTMEEIGYINSEDIEELRYKDVVGD
HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHC
INSRFFTADGKEAKTEINTHVIGLSLEELKNIPTVVALANGLQKKEALVAALNAGLIDVI
CCCCEEECCCCHHHHHHHHEEEEEEHHHHHCCCHHHHHHHCHHHHHHHHHHHCCCCEEEE
VITDRMAEYILQKND
EHHHHHHHHHHCCCC
>Mature Secondary Structure
MKWEEKRDMVKIATWYYHYGWTQAQIAKKIGISRSIISKTLQRAKDLGIVEIFIKDETYY
CCCCHHHHHEEEEEEHEECCCHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEECCEEE
TVDLEQKLEEKFGLEEAIVVATHDMSEEEALNFLAKEAAYTLSKRIAKVKTLGISWGKTI
EEEHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RKFANEFPFIPHKDLTIIPLIGGMGSSDIDLHSNQICYDLKKKMKCHSKYLYAPALVEDT
HHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCC
EMKTDLSKNKYISEVLEEGKTVDMAIVGVSSPYNHSTMEEIGYINSEDIEELRYKDVVGD
HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHC
INSRFFTADGKEAKTEINTHVIGLSLEELKNIPTVVALANGLQKKEALVAALNAGLIDVI
CCCCEEECCCCHHHHHHHHEEEEEEHHHHHCCCHHHHHHHCHHHHHHHHHHHCCCCEEEE
VITDRMAEYILQKND
EHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]