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The map label for this gene is yulB [H]

Identifier: 226222978

GI number: 226222978

Start: 379036

End: 379800

Strand: Direct

Name: yulB [H]

Synonym: Lm4b_00370

Alternate gene names: 226222978

Gene position: 379036-379800 (Clockwise)

Preceding gene: 226222967

Following gene: 226222979

Centisome position: 13.01

GC content: 36.21

Gene sequence:

>765_bases
ATGTTTCCATTTGAAAGACAAAACAAAATAATTCATCTACTAGACCAAAATAGCAAAATAACTGTACCAGAATTAAGTCG
TATCTTGGATGTCTCGATTAGTACCATCCGAAATGATTTATCTTCATTAGAAGAAAGCGGGATGATTAAAAAAGTACACG
GGGGTGCGGTACTTTTAAAGAGTGAAGAGAAATTTACTAATTTTAATGACCGGATTATTCGCAACATCGAAGAAAAAGAA
GCGATTGCGAAAGAAGCGGCGACTTTAGTAAAAAACAATCAAACGATTATTCTTGATGCCAGCTCGACTGCACTGGCGCT
TGCAAAAGAGTTACATGGTTTTTCAAGGCTGACTGTCATTACAAGTGGACTCTACACAGCAATCGAACTAAAAGACAACC
CGAATATCAGCGTTATTTTAACTGGCGGGATTGTGACGACGAACTCTTTTACACTGGAAGGGATTCTTGGCGCGAATTTA
ATTGAAAACATCCATGCCGATTTATGTTTTATGTCAGCAAAAGGTTTTACAATGGAAGAAGGCTTAACTGATTTCAACAT
TTATGAAACTGAACTAAAACGACTTCTTGCTAAACGTACTAACAAATTGATCGCACTTTTAGATCATACAAAAATGGGCG
TAATCTCCACCGCGAGCATTACAGCAGCAGAAAACATCGATTTACTAATTACAGATAACAAAATAAATAAAGCATTATAT
AAAAAATTCCAAGATGCAGGACTTCCTGTCAAAATTGCGGAATAA

Upstream 100 bases:

>100_bases
TTTTGTTGTGTTTTATAAAATATATTTGTGTTTTGTTATTTTTTTGGGTAATATGTATATACATAAAGAAATCATTGATA
GGTAAAAGGAGGGCGAGCGG

Downstream 100 bases:

>100_bases
AATAGAAATTGAAACTCTTTGGGCGACAATTGGTTCAAAGAGATTTTTTTGATAGGAGATTGAAAATGGATTATATTATT
ACAACTGATTTACCAAATGC

Product: regulatory protein (DeoR family)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MFPFERQNKIIHLLDQNSKITVPELSRILDVSISTIRNDLSSLEESGMIKKVHGGAVLLKSEEKFTNFNDRIIRNIEEKE
AIAKEAATLVKNNQTIILDASSTALALAKELHGFSRLTVITSGLYTAIELKDNPNISVILTGGIVTTNSFTLEGILGANL
IENIHADLCFMSAKGFTMEEGLTDFNIYETELKRLLAKRTNKLIALLDHTKMGVISTASITAAENIDLLITDNKINKALY
KKFQDAGLPVKIAE

Sequences:

>Translated_254_residues
MFPFERQNKIIHLLDQNSKITVPELSRILDVSISTIRNDLSSLEESGMIKKVHGGAVLLKSEEKFTNFNDRIIRNIEEKE
AIAKEAATLVKNNQTIILDASSTALALAKELHGFSRLTVITSGLYTAIELKDNPNISVILTGGIVTTNSFTLEGILGANL
IENIHADLCFMSAKGFTMEEGLTDFNIYETELKRLLAKRTNKLIALLDHTKMGVISTASITAAENIDLLITDNKINKALY
KKFQDAGLPVKIAE
>Mature_254_residues
MFPFERQNKIIHLLDQNSKITVPELSRILDVSISTIRNDLSSLEESGMIKKVHGGAVLLKSEEKFTNFNDRIIRNIEEKE
AIAKEAATLVKNNQTIILDASSTALALAKELHGFSRLTVITSGLYTAIELKDNPNISVILTGGIVTTNSFTLEGILGANL
IENIHADLCFMSAKGFTMEEGLTDFNIYETELKRLLAKRTNKLIALLDHTKMGVISTASITAAENIDLLITDNKINKALY
KKFQDAGLPVKIAE

Specific function: Repressor Of The Gat Operon For Galacticol Transport And Metabolism. [C]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=254, Percent_Identity=31.8897637795276, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1788069, Length=235, Percent_Identity=32.3404255319149, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789519, Length=248, Percent_Identity=27.4193548387097, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787540, Length=250, Percent_Identity=29.6, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI226510968, Length=249, Percent_Identity=29.718875502008, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI87082344, Length=245, Percent_Identity=26.9387755102041, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1789829, Length=228, Percent_Identity=29.3859649122807, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790635, Length=257, Percent_Identity=29.5719844357977, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790753, Length=248, Percent_Identity=24.5967741935484, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787063, Length=228, Percent_Identity=27.1929824561404, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789170, Length=238, Percent_Identity=28.9915966386555, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28016; Mature: 28016

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPFERQNKIIHLLDQNSKITVPELSRILDVSISTIRNDLSSLEESGMIKKVHGGAVLLK
CCCCCCCCCEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEE
SEEKFTNFNDRIIRNIEEKEAIAKEAATLVKNNQTIILDASSTALALAKELHGFSRLTVI
CCHHHCCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCHHHEEE
TSGLYTAIELKDNPNISVILTGGIVTTNSFTLEGILGANLIENIHADLCFMSAKGFTMEE
ECCCEEEEEECCCCCEEEEEECCEEEECCEEEEHHHHHHHHHHHHHHEEEEECCCCCHHC
GLTDFNIYETELKRLLAKRTNKLIALLDHTKMGVISTASITAAENIDLLITDNKINKALY
CCCCCEEHHHHHHHHHHHHHCCEEEEEECCCCCEEEECEEEEECCEEEEEECCHHHHHHH
KKFQDAGLPVKIAE
HHHHHCCCCEEECC
>Mature Secondary Structure
MFPFERQNKIIHLLDQNSKITVPELSRILDVSISTIRNDLSSLEESGMIKKVHGGAVLLK
CCCCCCCCCEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEE
SEEKFTNFNDRIIRNIEEKEAIAKEAATLVKNNQTIILDASSTALALAKELHGFSRLTVI
CCHHHCCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCHHHEEE
TSGLYTAIELKDNPNISVILTGGIVTTNSFTLEGILGANLIENIHADLCFMSAKGFTMEE
ECCCEEEEEECCCCCEEEEEECCEEEECCEEEEHHHHHHHHHHHHHHEEEEECCCCCHHC
GLTDFNIYETELKRLLAKRTNKLIALLDHTKMGVISTASITAAENIDLLITDNKINKALY
CCCCCEEHHHHHHHHHHHHHCCEEEEEECCCCCEEEECEEEEECCEEEEEECCHHHHHHH
KKFQDAGLPVKIAE
HHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]