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The map label for this gene is lytB [H]

Identifier: 225862006

GI number: 225862006

Start: 2061822

End: 2063525

Strand: Reverse

Name: lytB [H]

Synonym: SPT_2208

Alternate gene names: 225862006

Gene position: 2063525-2061822 (Counterclockwise)

Preceding gene: 225862007

Following gene: 225862003

Centisome position: 97.7

GC content: 41.84

Gene sequence:

>1704_bases
TTGCCGTCAAAAATAAAAGCAAAGTTAGAAGTAGCTTTTGATCAGTTTAAAAAAGATACATTGAAACCAGGAGAAAAGGT
AGCAGAAGCTGAGAAGAAAGTTGCAGAAGCTAAGAAAAAAGCCGAGGATCAAAAAGAACAAGATCGCCGTAACTACCCAA
CCAATACTTACAAAACGCTTGAACTTGAAATTGCTGAGTCCGATGTGAAAGTTAAAGAAGCGGAGCTTGAACTAGTAAAA
GAGGAAGCTAAGGAATCTCGAAACGAGGAAAAAGTTAAGCAAGCAAAAGCGAAAGTTGAGAGTGAAAAAGCAGAGGCTAT
AAGGTTAGAAGAAATCAAGACAGATCGTGAAGAAGCTAAACGAAAAGCAGATGCTAAGTTGAAGGAAGCTGTTGAAAACA
ATGCAGCGACTTCAGAGCAAGGTGAACCAAAGAGGCGGGTAAAACGAGGAGTTCTTGGAGAGCCAGCAACACCTGATAAA
AAAGAAAATGATGCGAAGTCTTCAGATTCTAGCGTAGGTGAAGAAACTCTTCCAAGCCCATCCCTGAAACCAGAAAAAAA
GGTTGCAGAAGCTGAGAAGAAGGTTGCAGAAGCTGAGAAAAAAGCCAAGGATCAAAAAGAAGAAGATCGCCGTAACTACC
CAACCAATACTTACAAAACGCTTGAACTTGAAATTGCTGAGTCCGATGTGAAAGTTAAAGAAGCGGAGCTTGAACTAGTA
AAAGAGGAAGCTAAGGAATCTCGAAACGAGGAAAAAGTTAAGCAAGCAAAAGCGAAAGTTGAGAGTAAAAAAGCTGAGGC
TACAAGGTTAGAAAAAATCAAGACAGATCGTAAAAAAGCAGAAGAAGCTAAACGAAAAGCAGCAGAAGAAGATAAAGTTA
AAGAAAAACCAGCTGAACAACCACAACCAGCGCCGGCTCCAAAACCAGAAAAACCAGCTCCAGCTCCAAAACCAGAGAAT
CCAGCTGAACAACCAAAAGCAGAAAAACCAGCTGATCAACAAGCTGAAGAAGACTATGCTCGTAGATCAGAAGAAGAATA
TAATCGCTTGACTCAACAGCAACCGCCAAAAACTGAAAAACCAGCACAACCATCTACTCCAAAAACAGGCTGGAAACAAG
AAAACGGTATGTGGTACTTCTACAATACTGATGGTTCAATGGCGACAGGATGGCTCCAAAACAATGGCTCATGGTACTAT
CTAAACGCTAATGGTTCAATGGCAACAGGATGGCTCCAATACAATGGTTCATGGTACTACCTAAACGCTAATGGTGATAT
GGCGACAGGATGGCTCCAAAACAATGGTTCATGGTACTACCTAAACGCTAATGGTTCAATGGCGACAGGATGGCTCCAAT
ACAATGGCTCATGGTACTACCTAAACGCTAATGGTGATATGGCGACAGGATGGCTCCAAAACAATGGCTCATGGTACTAC
CTAAACGCTAATGGTTCAATGGCGACAGGATGGCTCCAAAACAATGGCTCATGGTACTACCTAAACGCTAATGGTTCAAT
GGCGACAGATTGGGTGAAAGATGGAGATACCTGGTACTATCTTGAAGCATCAGGTGCTATGAAAGCAAGCCAATGGTTCA
AAGTATCAGATAAATGGTACTATGTCAATGGCTCAGGTGCCCTTGCAGTCAACACAACTGTAGATAGCTATAGAGTCAAT
GCCAATGGTGAATGGGTAAACTAA

Upstream 100 bases:

>100_bases
TAGAAAACGACATACCAAAACTGTAGCGCTAATTAACGAGTTGCAAAACATTAAGAAAACGTATTTGTATAATTTAAATG
TTTTAAAAGAGAAGTCTGAG

Downstream 100 bases:

>100_bases
ACCTAATATAACTAGTTAATACTGACTTCCTGTAAGAACTCTTTAAAGTATTCCCTACAAATACCATATCCTTTCAGTAG
ATAATATACCCTTGTAGGAA

Product: surface protein PspC

Products: NA

Alternate protein names: Murein hydrolase [H]

Number of amino acids: Translated: 567; Mature: 566

Protein sequence:

>567_residues
MPSKIKAKLEVAFDQFKKDTLKPGEKVAEAEKKVAEAKKKAEDQKEQDRRNYPTNTYKTLELEIAESDVKVKEAELELVK
EEAKESRNEEKVKQAKAKVESEKAEAIRLEEIKTDREEAKRKADAKLKEAVENNAATSEQGEPKRRVKRGVLGEPATPDK
KENDAKSSDSSVGEETLPSPSLKPEKKVAEAEKKVAEAEKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELV
KEEAKESRNEEKVKQAKAKVESKKAEATRLEKIKTDRKKAEEAKRKAAEEDKVKEKPAEQPQPAPAPKPEKPAPAPKPEN
PAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTEKPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYY
LNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYYLNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYY
LNANGSMATGWLQNNGSWYYLNANGSMATDWVKDGDTWYYLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDSYRVN
ANGEWVN

Sequences:

>Translated_567_residues
MPSKIKAKLEVAFDQFKKDTLKPGEKVAEAEKKVAEAKKKAEDQKEQDRRNYPTNTYKTLELEIAESDVKVKEAELELVK
EEAKESRNEEKVKQAKAKVESEKAEAIRLEEIKTDREEAKRKADAKLKEAVENNAATSEQGEPKRRVKRGVLGEPATPDK
KENDAKSSDSSVGEETLPSPSLKPEKKVAEAEKKVAEAEKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELV
KEEAKESRNEEKVKQAKAKVESKKAEATRLEKIKTDRKKAEEAKRKAAEEDKVKEKPAEQPQPAPAPKPEKPAPAPKPEN
PAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTEKPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYY
LNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYYLNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYY
LNANGSMATGWLQNNGSWYYLNANGSMATDWVKDGDTWYYLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDSYRVN
ANGEWVN
>Mature_566_residues
PSKIKAKLEVAFDQFKKDTLKPGEKVAEAEKKVAEAKKKAEDQKEQDRRNYPTNTYKTLELEIAESDVKVKEAELELVKE
EAKESRNEEKVKQAKAKVESEKAEAIRLEEIKTDREEAKRKADAKLKEAVENNAATSEQGEPKRRVKRGVLGEPATPDKK
ENDAKSSDSSVGEETLPSPSLKPEKKVAEAEKKVAEAEKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELVK
EEAKESRNEEKVKQAKAKVESKKAEATRLEKIKTDRKKAEEAKRKAAEEDKVKEKPAEQPQPAPAPKPEKPAPAPKPENP
AEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTEKPAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYL
NANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYYLNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYYL
NANGSMATGWLQNNGSWYYLNANGSMATDWVKDGDTWYYLEASGAMKASQWFKVSDKWYYVNGSGALAVNTTVDSYRVNA
NGEWVN

Specific function: Plays an important role in cell wall degradation and cell separation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 15 cell wall-binding repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018337
- InterPro:   IPR013338
- InterPro:   IPR002901 [H]

Pfam domain/function: PF01473 CW_binding_1; PF01832 Glucosaminidase [H]

EC number: =3.2.1.96 [H]

Molecular weight: Translated: 64187; Mature: 64056

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSKIKAKLEVAFDQFKKDTLKPGEKVAEAEKKVAEAKKKAEDQKEQDRRNYPTNTYKTL
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
ELEIAESDVKVKEAELELVKEEAKESRNEEKVKQAKAKVESEKAEAIRLEEIKTDREEAK
EEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RKADAKLKEAVENNAATSEQGEPKRRVKRGVLGEPATPDKKENDAKSSDSSVGEETLPSP
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
SLKPEKKVAEAEKKVAEAEKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHH
KEEAKESRNEEKVKQAKAKVESKKAEATRLEKIKTDRKKAEEAKRKAAEEDKVKEKPAEQ
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PQPAPAPKPEKPAPAPKPENPAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTEK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCC
PAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNANGSMATGWLQYNGSWYY
CCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEECCEEEE
LNANGDMATGWLQNNGSWYYLNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYY
EECCCCEEEEEEECCCCEEEEECCCCEEEEEEEECCEEEEEECCCCEEEEEEECCCCEEE
LNANGSMATGWLQNNGSWYYLNANGSMATDWVKDGDTWYYLEASGAMKASQWFKVSDKWY
EECCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCEEEECCEEE
YVNGSGALAVNTTVDSYRVNANGEWVN
EECCCCEEEEEEEECCEEECCCCCCCC
>Mature Secondary Structure 
PSKIKAKLEVAFDQFKKDTLKPGEKVAEAEKKVAEAKKKAEDQKEQDRRNYPTNTYKTL
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
ELEIAESDVKVKEAELELVKEEAKESRNEEKVKQAKAKVESEKAEAIRLEEIKTDREEAK
EEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
RKADAKLKEAVENNAATSEQGEPKRRVKRGVLGEPATPDKKENDAKSSDSSVGEETLPSP
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
SLKPEKKVAEAEKKVAEAEKKAKDQKEEDRRNYPTNTYKTLELEIAESDVKVKEAELELV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHH
KEEAKESRNEEKVKQAKAKVESKKAEATRLEKIKTDRKKAEEAKRKAAEEDKVKEKPAEQ
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PQPAPAPKPEKPAPAPKPENPAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTEK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCC
PAQPSTPKTGWKQENGMWYFYNTDGSMATGWLQNNGSWYYLNANGSMATGWLQYNGSWYY
CCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEECCEEEE
LNANGDMATGWLQNNGSWYYLNANGSMATGWLQYNGSWYYLNANGDMATGWLQNNGSWYY
EECCCCEEEEEEECCCCEEEEECCCCEEEEEEEECCEEEEEECCCCEEEEEEECCCCEEE
LNANGSMATGWLQNNGSWYYLNANGSMATDWVKDGDTWYYLEASGAMKASQWFKVSDKWY
EECCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCEEEECCEEE
YVNGSGALAVNTTVDSYRVNANGEWVN
EECCCCEEEEEEEECCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10096093; 11544234 [H]