Click here to switch to the map view.

The map label for this gene is yajF [C]

Identifier: 225861960

GI number: 225861960

Start: 2002445

End: 2003314

Strand: Reverse

Name: yajF [C]

Synonym: SPT_2155

Alternate gene names: 225861960

Gene position: 2003314-2002445 (Counterclockwise)

Preceding gene: 225861961

Following gene: 225861959

Centisome position: 94.85

GC content: 47.47

Gene sequence:

>870_bases
ATGACCATTGCAACGATTGATATCGGAGGGACTGGGATTAAGTTTGCCAGTCTGACTCCTGATGGGAAAATACTGGATAA
GACAAGTATTTCAACGCCTGAAAACTTGGAGGATTTACTAGCGTGGCTAGATCAACGCTTGTCAGAACAGGATTACAGTG
GGATTGCTATGAGCGTTCCGGGTGCGGTCAATCAAGAGACAGGTGTGATTGATGGCTTCAGTGCGGTGCCCTACATCCAT
GGCTTTTCTTGGTATGAGGCGCTTAGCTCTTATCAGCTACCTGTCCATTTAGAAAATGATGCCAACTGCGTTGGACTCAG
TGAACTACTAGCTCATCCAGAGCTTGAAAATGCAGCCTGTGTCGTGATTGGGACAGGGATTGGCGGAGCCATGATTATCA
ATGGTAGACTTCATCGAGGTCGCCACGGTCTGGGTGGAGAATTTGGCTACATGACAACCCTTGCCCCTGCTGAAAAACTT
AATAACTGGTCGCAACTAGCATCAACTGGGAATATGGTACGATACGTGATTGAAAAATCTGGTCATACTGATTGGGACGG
TCGCAAGATTTACCAAGAGGCCGCAGCTGGTAATGCTCTTTGTCAAGAAGCCATTGAGCGAATGAACCGCAATCTGGCGC
AAGGCTTGCTCAATATCCAGTATCTCATCGATCCAGATGTCATCAGTCTGGGTGGCTCTATCAGTCAAAATCCAGATTTT
ATCCAAGGTGTCAAGAAGGCTGTTGAAGACTTTGTCGATGCCTACGAAGAATACACGGTCGCACCAGTTATCCAGGCCTG
CACCTATCACGCAGATGCCAATCTCTACGGTGCTCTTGTCAACTGGCTACAGGAGGAAAAGCAATGGTAA

Upstream 100 bases:

>100_bases
AAAAAGAAGAAATTTAATTTCAAAAAGTAAACATCAAAAGAAAGGAGGGGCGAAAAAGTAAGAACTAACTGCTGATTCGC
CCCTTTTTATGGTAAAAACA

Downstream 100 bases:

>100_bases
GATTTACAGGACTTAGTCCCAAACAAACGCAAGCTATTGAGGTTTTAAAAGGTCATATTTCTCTACCAGATGTGGAAGTG
GCTGTCACTCAGTCTGACCA

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYIH
GFSWYEALSSYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIGGAMIINGRLHRGRHGLGGEFGYMTTLAPAEKL
NNWSQLASTGNMVRYVIEKSGHTDWDGRKIYQEAAAGNALCQEAIERMNRNLAQGLLNIQYLIDPDVISLGGSISQNPDF
IQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW

Sequences:

>Translated_289_residues
MTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYIH
GFSWYEALSSYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIGGAMIINGRLHRGRHGLGGEFGYMTTLAPAEKL
NNWSQLASTGNMVRYVIEKSGHTDWDGRKIYQEAAAGNALCQEAIERMNRNLAQGLLNIQYLIDPDVISLGGSISQNPDF
IQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW
>Mature_288_residues
TIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYIHG
FSWYEALSSYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIGGAMIINGRLHRGRHGLGGEFGYMTTLAPAEKLN
NWSQLASTGNMVRYVIEKSGHTDWDGRKIYQEAAAGNALCQEAIERMNRNLAQGLLNIQYLIDPDVISLGGSISQNPDFI
QGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW

Specific function: Unknown

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI87081733, Length=305, Percent_Identity=28.8524590163934, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 31438; Mature: 31306

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVP
CEEEEEEECCCCEEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECC
GAVNQETGVIDGFSAVPYIHGFSWYEALSSYQLPVHLENDANCVGLSELLAHPELENAAC
CCCCCCCCCCCCCCCCCHHCCHHHHHHHHCCCCCEEECCCCCEECHHHHHCCCCCCCCEE
VVIGTGIGGAMIINGRLHRGRHGLGGEFGYMTTLAPAEKLNNWSQLASTGNMVRYVIEKS
EEEECCCCCEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHCCHHHHHHCCHHEEEEECCC
GHTDWDGRKIYQEAAAGNALCQEAIERMNRNLAQGLLNIQYLIDPDVISLGGSISQNPDF
CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHCCCCCCCCCHH
IQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVP
EEEEEEECCCCEEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECC
GAVNQETGVIDGFSAVPYIHGFSWYEALSSYQLPVHLENDANCVGLSELLAHPELENAAC
CCCCCCCCCCCCCCCCCHHCCHHHHHHHHCCCCCEEECCCCCEECHHHHHCCCCCCCCEE
VVIGTGIGGAMIINGRLHRGRHGLGGEFGYMTTLAPAEKLNNWSQLASTGNMVRYVIEKS
EEEECCCCCEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHCCHHHHHHCCHHEEEEECCC
GHTDWDGRKIYQEAAAGNALCQEAIERMNRNLAQGLLNIQYLIDPDVISLGGSISQNPDF
CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHCCCCCCCCCHH
IQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842; 8177218 [H]