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The map label for this gene is ompR [H]

Identifier: 225686276

GI number: 225686276

Start: 441488

End: 442204

Strand: Reverse

Name: ompR [H]

Synonym: BMEA_B0452

Alternate gene names: 225686276

Gene position: 442204-441488 (Counterclockwise)

Preceding gene: 225686280

Following gene: 225686275

Centisome position: 37.3

GC content: 57.88

Gene sequence:

>717_bases
TTGAAAGAAGACGCCCACATTCTGATCGTCGATGACGACAAGGATATACGCGACCTTCTGCACGAATTTCTCAAACGGCG
CGGAATGCACGTTTCCATCGCCTGCAATGGTGATGAAATGCTGGATGTGCTGAGCCGCACGCCCATTGATCTTGTCATTC
TGGATGTCATGCTGCCGGGAAAAAGCGGCATAGAAATCTGTCAGGATGTGCGGCGCACCTCCCGTGTGCCTATCATTATG
CTGACGGCCATTGCCGATGCAGCCGACAAGATACTGGGATTGGAAATCGGCGCGGACGACTATATCGCCAAGCCCTTCGA
CCCGCGCGAGTTGCTTGCGCGCATCCGCGCCGTGCTTCGCCGTTTCGAGGGCAATCGCAGCCCGCAGCGCGCCCTTACGC
AGATTTACCGCTTCGCGGGCTGGACGCTCGACTGCGCCCGGCGGCGCCTCACATCGCCCCACGATGTGCGGGTGGAACTG
ACGACAGCCGAATTCAACCTGCTCGAAGCTTTCGTCAAAAGCTCGCAGCATATTCTAAGCCGCGACCAGTTGATGGAAAT
GGCAGGCCATCAGGCCGTCTATGGCTATGATCGCAGCGTGGATATTCTCATCAGCCGCCTGCGCAAGAAGCTGGAGGACG
ATCCGTGCGCGCCGAAGCTGATCCTTACCATTCGCGGCGGCGGCTACCAGTTCGGGCATGAAGTGGAAATAGCATGA

Upstream 100 bases:

>100_bases
GATGGAAAATGCGCCAAAACAAATAGTTAGAGCAGTTCCGCCGTTTCTGTTAAAATAAGAAACGCTACAATACCCACCCC
AACGGCAATGGAACAGCAAA

Downstream 100 bases:

>100_bases
GATTGCCCCTTCCACACTCGCTGCCAATCTGGCTCCTGACCATTCTCATAAGCGGTCTTCTGACCACACAGATCGCCACA
CTGTGGATCGTTTCGCAGGA

Product: putative transcriptional regulator ycf27

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPGKSGIEICQDVRRTSRVPIIM
LTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRRFEGNRSPQRALTQIYRFAGWTLDCARRRLTSPHDVRVEL
TTAEFNLLEAFVKSSQHILSRDQLMEMAGHQAVYGYDRSVDILISRLRKKLEDDPCAPKLILTIRGGGYQFGHEVEIA

Sequences:

>Translated_238_residues
MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPGKSGIEICQDVRRTSRVPIIM
LTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRRFEGNRSPQRALTQIYRFAGWTLDCARRRLTSPHDVRVEL
TTAEFNLLEAFVKSSQHILSRDQLMEMAGHQAVYGYDRSVDILISRLRKKLEDDPCAPKLILTIRGGGYQFGHEVEIA
>Mature_238_residues
MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPGKSGIEICQDVRRTSRVPIIM
LTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRRFEGNRSPQRALTQIYRFAGWTLDCARRRLTSPHDVRVEL
TTAEFNLLEAFVKSSQHILSRDQLMEMAGHQAVYGYDRSVDILISRLRKKLEDDPCAPKLILTIRGGGYQFGHEVEIA

Specific function: The N-terminus of this protein is required for the transcriptional expression of both major outer membrane protein genes ompF and ompC; its C-terminal moiety mediates the multimerization of the ompR protein. As a multimer, it turns on the expression of th

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=234, Percent_Identity=44.017094017094, Blast_Score=187, Evalue=6e-49,
Organism=Escherichia coli, GI1790863, Length=233, Percent_Identity=40.343347639485, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1786599, Length=228, Percent_Identity=38.5964912280702, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1788394, Length=225, Percent_Identity=37.7777777777778, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787229, Length=232, Percent_Identity=36.6379310344828, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI2367329, Length=225, Percent_Identity=39.1111111111111, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1790860, Length=226, Percent_Identity=38.0530973451327, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI145693140, Length=236, Percent_Identity=36.0169491525424, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1786911, Length=228, Percent_Identity=36.4035087719298, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=34.5132743362832, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI87082012, Length=225, Percent_Identity=33.7777777777778, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787375, Length=226, Percent_Identity=31.4159292035398, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789402, Length=234, Percent_Identity=32.9059829059829, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790552, Length=187, Percent_Identity=31.0160427807487, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790299, Length=124, Percent_Identity=29.0322580645161, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788550, Length=106, Percent_Identity=34.9056603773585, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27003; Mature: 27003

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPG
CCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCHHEEEEEEECCC
KSGIEICQDVRRTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLR
CCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHH
RFEGNRSPQRALTQIYRFAGWTLDCARRRLTSPHDVRVELTTAEFNLLEAFVKSSQHILS
HHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
RDQLMEMAGHQAVYGYDRSVDILISRLRKKLEDDPCAPKLILTIRGGGYQFGHEVEIA
HHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCEECCCEEECC
>Mature Secondary Structure
MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPG
CCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCHHEEEEEEECCC
KSGIEICQDVRRTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLR
CCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHH
RFEGNRSPQRALTQIYRFAGWTLDCARRRLTSPHDVRVELTTAEFNLLEAFVKSSQHILS
HHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
RDQLMEMAGHQAVYGYDRSVDILISRLRKKLEDDPCAPKLILTIRGGGYQFGHEVEIA
HHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]