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The map label for this gene is yfdE [H]

Identifier: 225686023

GI number: 225686023

Start: 150956

End: 152173

Strand: Direct

Name: yfdE [H]

Synonym: BMEA_B0167

Alternate gene names: 225686023

Gene position: 150956-152173 (Clockwise)

Preceding gene: 225686022

Following gene: 225686024

Centisome position: 12.73

GC content: 58.29

Gene sequence:

>1218_bases
ATGACTGCACCCTTCTCAGTCCAGCCGCCAGAAAGCGCCCTCCGCCCTCTCGACGGGATAACGGTCGTCTCTCTGGAACA
CGCCATAGCGGCCCCTTTCGCCACGCGCCAGCTTGCCGATCTGGGCGCACGCGTCATCAAGGTCGAGCGGCCTGGGGTCG
GCGATTTCGCCCGCGCCTATGATGATCGCGTCAATGGTATGGCGTCACATTTTGTCTGGTGCAACCGTTCCAAGGAGAGC
CTTGCGATTGATCTGAAACACCCGGATGCCAGAGGCATTCTGCATGATCTCGTGTCGAAAGCGGATGTTCTTGTTCAAAA
CCTTGCACCGGGCGCGGCAGCGCGGCTGGGGCTTTCAGCGGAGGCGCTGCGGGCGGACTGTCCGCACCTTATCGTTTGTG
ATATTTCCGGCTATGGGTCGGATGGTCCCTATCGTGACCGTAAGGCTTACGATCTGCTGATCCAGAGCGAAGCAGGCTTC
CTGTCCGTCACAGGTACGCCCGACGAGCAGGCGAAAGCCGGTATTTCCATCGCCGATATTGCAGCCGGCATGTATGCCTA
TAGCGGTATTCTCTCTGCCCTGCTGATGCGTGAGCGCACTGGTCAAGGCAGCCATATCGAGGTGTCGATGCTGGAGGCAC
TGGGTGAATGGATGGGCTTTCCGCTATACTATACTTATGGTGGCAAGGAACCGCCTCCGCGCACAGGCGCCAGCCACGCC
ACCATCTTCCCCTATGGGCCATTTCCGACCGGCGACGGCAAAACAGTGATGCTGGGTCTGCAAAACGAACGTGAATGGGC
GATCTTTTGTGAAAAAGTGTTGCATCAGCCCGCTCTTGCCCAGGACGAACGATTTGTCTCGAACGTCTTGCGGGTTCGTA
ACCGTGATGCTCTCACCGAAATTATTGTTGCATCCTTTGCCGCCAGCAATGCTGAAGCGATTACCATGCAATTGGACGAA
GCCGGCATCGCCAATGCGCGCGTGCGCACCATGGCCGAAGTGTGGGATCACCCTCAATTGCAGGCACGCGGACGCTGGAC
AGAAATTACTACGCCCGCCGGTCAGGTGCCTGCATTGCTTCCGCCAGCATTTCCCAACGGTATGGAGCCGCGAATGGATC
CCGTTCCCGCGCTTGGCGCTCACAATATCAGTATCCTGACAGAGCTTGGCCTTGATGAGGCCCAGATTGCGGCTTTGCGC
GAGGCGGGGGCAATATAA

Upstream 100 bases:

>100_bases
GGTTTAATTCGTCAAATGGAAGCCGAACACCGCTTCGCGCTTTTGCTGAAAATATTTTAGATTTTCATCATTCAAATTTT
CAAGCCGGAGCATATACGCC

Downstream 100 bases:

>100_bases
GCAAAAATGCCAAAGTGATTATCCATTCCGGGCCGGGGGTATATTTTAGCAATATCGAGGATGTATAATGGAATTGAATA
TTGAACAGTTGCGAAGCTGG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MTAPFSVQPPESALRPLDGITVVSLEHAIAAPFATRQLADLGARVIKVERPGVGDFARAYDDRVNGMASHFVWCNRSKES
LAIDLKHPDARGILHDLVSKADVLVQNLAPGAAARLGLSAEALRADCPHLIVCDISGYGSDGPYRDRKAYDLLIQSEAGF
LSVTGTPDEQAKAGISIADIAAGMYAYSGILSALLMRERTGQGSHIEVSMLEALGEWMGFPLYYTYGGKEPPPRTGASHA
TIFPYGPFPTGDGKTVMLGLQNEREWAIFCEKVLHQPALAQDERFVSNVLRVRNRDALTEIIVASFAASNAEAITMQLDE
AGIANARVRTMAEVWDHPQLQARGRWTEITTPAGQVPALLPPAFPNGMEPRMDPVPALGAHNISILTELGLDEAQIAALR
EAGAI

Sequences:

>Translated_405_residues
MTAPFSVQPPESALRPLDGITVVSLEHAIAAPFATRQLADLGARVIKVERPGVGDFARAYDDRVNGMASHFVWCNRSKES
LAIDLKHPDARGILHDLVSKADVLVQNLAPGAAARLGLSAEALRADCPHLIVCDISGYGSDGPYRDRKAYDLLIQSEAGF
LSVTGTPDEQAKAGISIADIAAGMYAYSGILSALLMRERTGQGSHIEVSMLEALGEWMGFPLYYTYGGKEPPPRTGASHA
TIFPYGPFPTGDGKTVMLGLQNEREWAIFCEKVLHQPALAQDERFVSNVLRVRNRDALTEIIVASFAASNAEAITMQLDE
AGIANARVRTMAEVWDHPQLQARGRWTEITTPAGQVPALLPPAFPNGMEPRMDPVPALGAHNISILTELGLDEAQIAALR
EAGAI
>Mature_404_residues
TAPFSVQPPESALRPLDGITVVSLEHAIAAPFATRQLADLGARVIKVERPGVGDFARAYDDRVNGMASHFVWCNRSKESL
AIDLKHPDARGILHDLVSKADVLVQNLAPGAAARLGLSAEALRADCPHLIVCDISGYGSDGPYRDRKAYDLLIQSEAGFL
SVTGTPDEQAKAGISIADIAAGMYAYSGILSALLMRERTGQGSHIEVSMLEALGEWMGFPLYYTYGGKEPPPRTGASHAT
IFPYGPFPTGDGKTVMLGLQNEREWAIFCEKVLHQPALAQDERFVSNVLRVRNRDALTEIIVASFAASNAEAITMQLDEA
GIANARVRTMAEVWDHPQLQARGRWTEITTPAGQVPALLPPAFPNGMEPRMDPVPALGAHNISILTELGLDEAQIAALRE
AGAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=406, Percent_Identity=32.512315270936, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI300863124, Length=429, Percent_Identity=30.5361305361305, Blast_Score=208, Evalue=7e-54,
Organism=Homo sapiens, GI300863126, Length=405, Percent_Identity=31.1111111111111, Blast_Score=176, Evalue=4e-44,
Organism=Homo sapiens, GI13376042, Length=429, Percent_Identity=27.7389277389277, Blast_Score=165, Evalue=6e-41,
Organism=Homo sapiens, GI266456254, Length=393, Percent_Identity=29.0076335877863, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI42794625, Length=393, Percent_Identity=29.0076335877863, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI266458393, Length=199, Percent_Identity=35.1758793969849, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI266458397, Length=199, Percent_Identity=35.1758793969849, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI266458395, Length=136, Percent_Identity=35.2941176470588, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI42822893, Length=136, Percent_Identity=35.2941176470588, Blast_Score=77, Evalue=2e-14,
Organism=Escherichia coli, GI87082093, Length=334, Percent_Identity=35.3293413173653, Blast_Score=220, Evalue=2e-58,
Organism=Escherichia coli, GI1788717, Length=416, Percent_Identity=29.0865384615385, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1786222, Length=406, Percent_Identity=25.615763546798, Blast_Score=96, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI115535051, Length=249, Percent_Identity=28.9156626506024, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=214, Percent_Identity=29.4392523364486, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648431, Length=398, Percent_Identity=33.9195979899498, Blast_Score=196, Evalue=2e-50,
Organism=Drosophila melanogaster, GI24585488, Length=301, Percent_Identity=28.5714285714286, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43553; Mature: 43422

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPFSVQPPESALRPLDGITVVSLEHAIAAPFATRQLADLGARVIKVERPGVGDFARAY
CCCCCCCCCCHHHHCCCCCEEEEEEHHHHHCCHHHHHHHHCCCEEEEEECCCCCHHHHHH
DDRVNGMASHFVWCNRSKESLAIDLKHPDARGILHDLVSKADVLVQNLAPGAAARLGLSA
HHHHHHHHHHEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCH
EALRADCPHLIVCDISGYGSDGPYRDRKAYDLLIQSEAGFLSVTGTPDEQAKAGISIADI
HHHHCCCCEEEEEECCCCCCCCCCCCCHHEEEEEECCCCEEEEECCCCHHHHCCCCHHHH
AAGMYAYSGILSALLMRERTGQGSHIEVSMLEALGEWMGFPLYYTYGGKEPPPRTGASHA
HHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCE
TIFPYGPFPTGDGKTVMLGLQNEREWAIFCEKVLHQPALAQDERFVSNVLRVRNRDALTE
EEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHH
IIVASFAASNAEAITMQLDEAGIANARVRTMAEVWDHPQLQARGRWTEITTPAGQVPALL
HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCEEEECCCCCCCCCCC
PPAFPNGMEPRMDPVPALGAHNISILTELGLDEAQIAALREAGAI
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TAPFSVQPPESALRPLDGITVVSLEHAIAAPFATRQLADLGARVIKVERPGVGDFARAY
CCCCCCCCCHHHHCCCCCEEEEEEHHHHHCCHHHHHHHHCCCEEEEEECCCCCHHHHHH
DDRVNGMASHFVWCNRSKESLAIDLKHPDARGILHDLVSKADVLVQNLAPGAAARLGLSA
HHHHHHHHHHEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCH
EALRADCPHLIVCDISGYGSDGPYRDRKAYDLLIQSEAGFLSVTGTPDEQAKAGISIADI
HHHHCCCCEEEEEECCCCCCCCCCCCCHHEEEEEECCCCEEEEECCCCHHHHCCCCHHHH
AAGMYAYSGILSALLMRERTGQGSHIEVSMLEALGEWMGFPLYYTYGGKEPPPRTGASHA
HHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCE
TIFPYGPFPTGDGKTVMLGLQNEREWAIFCEKVLHQPALAQDERFVSNVLRVRNRDALTE
EEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHH
IIVASFAASNAEAITMQLDEAGIANARVRTMAEVWDHPQLQARGRWTEITTPAGQVPALL
HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCEEEECCCCCCCCCCC
PPAFPNGMEPRMDPVPALGAHNISILTELGLDEAQIAALREAGAI
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]