Definition | Brucella melitensis ATCC 23457 chromosome chromosome II, complete sequence. |
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Accession | NC_012442 |
Length | 1,185,518 |
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The map label for this gene is vjbR
Identifier: 225685981
GI number: 225685981
Start: 118359
End: 119138
Strand: Direct
Name: vjbR
Synonym: BMEA_B0122
Alternate gene names: 225685981
Gene position: 118359-119138 (Clockwise)
Preceding gene: 225685980
Following gene: 225685988
Centisome position: 9.98
GC content: 53.33
Gene sequence:
>780_bases ATGAGTCTTGATCTCGTTCATTTTCCGAATTACAAAAAAACCTTTTTTGGTTCTTCCTTTCAAAGCGATACTTTGGCGCT TCTAACCCGCATCCGGGATGAAATAGGATGCCGCTACGTAACGCATACCTATCGTGGTCGCGTAGGCGACTGCACGAAGG TGAATTCAGCCGATCTGACTGTTCTTATGACGCTGCCTGCTACCTGGGTCGCGCGCTATTCCTCGAAAAACTACTTTGCC ATTGACCCGGTTTTTCAGGAAGACGCTCCGTATTACCGCAATGATACGAGCGCCATTGCCCGCGACCTGAAAGAAGATGC GGATATTTGCCCGGCCGTTGCCGAACTGTTGCATGATGCTGAAAAGCACGGCCTGGGAAATCTTTTCATCGCCGTATCCG CGCGCAATCCCAAGGGCGTTGCGGGTTGTACGGTTTTCACTTTCGAGGTGGAGGACGAAGACCGTACGCAATTCCTTGCC AGGATGCGCCCGCGCCTTCTAAGCCTTGCCGGCATCATTCATGGAACTGTCTGCGGCTGCAAGGATGCAAATTCAGTTGC AAGCCTTCTCACCCCGCGCGAGGTCGATTGCCTGCGCTGGGCTGCCAATGGCAAGACTGATGGCGAAATCGCCGAAATCC TCAGCATCGCCCGCTGGACGGTGGTGACTTATCTACAGAATGCCAAAATCAAGCTGAACTGTTCCAATCGAACGTCGGCA GTGGCGACGGCGCTTTCCCTCGGCATTATCGATATGCCCGAGGTACAGCATCTCGTCTGA
Upstream 100 bases:
>100_bases TAAGCGATTGACGGCCTCTGAGGGGAGGCGATTCTCTCGCAAGCAGTTATAGAGATACCAGAGCGAAGCCCGCATGGTTT CATCACCAAGGATATTTCCA
Downstream 100 bases:
>100_bases TCAACATGGTCGCGCGGAAACCTTCCGCGCGACGCCGTAGCAGGCGAAAAGAAAAGCTCAGACGCGTTTCAGGCGCGTTT GCGCAGGGGCAACCGGGCAT
Product: regulatory protein LuxR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MSLDLVHFPNYKKTFFGSSFQSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFA IDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLA RMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA VATALSLGIIDMPEVQHLV
Sequences:
>Translated_259_residues MSLDLVHFPNYKKTFFGSSFQSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFA IDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLA RMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA VATALSLGIIDMPEVQHLV >Mature_258_residues SLDLVHFPNYKKTFFGSSFQSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLAR MRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAV ATALSLGIIDMPEVQHLV
Specific function: Transcriptional regulator mediating the effects of the quorum sensing autoinducer C12-HSL (N-dodecanoyl-homoserine lactone)
COG id: COG2771
COG function: function code K; DNA-binding HTH domain-containing proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH luxR-type DNA-binding domain
Homologues:
Organism=Escherichia coli, GI1788224, Length=191, Percent_Identity=28.2722513089005, Blast_Score=67, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): VJBR_BRUA2 (Q2YJ50)
Other databases:
- EMBL: AM040265 - RefSeq: YP_418357.1 - ProteinModelPortal: Q2YJ50 - STRING: Q2YJ50 - GeneID: 3828180 - GenomeReviews: AM040265_GR - KEGG: bmf:BAB2_0118 - eggNOG: COG2771 - HOGENOM: HBG366001 - OMA: ITIRERE - ProtClustDB: CLSK899077 - BioCyc: BMEL359391:BAB2_0118-MONOMER - GO: GO:0005622 - InterPro: IPR016032 - InterPro: IPR005143 - InterPro: IPR000792 - InterPro: IPR011991 - Gene3D: G3DSA:3.30.450.80 - Gene3D: G3DSA:1.10.10.10 - PRINTS: PR00038 - SMART: SM00421
Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE; SSF46894 Bipartite_resp_reg_C-effector; SSF75516 TF_LuxR_autoind-bd_dom
EC number: NA
Molecular weight: Translated: 28625; Mature: 28494
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: PS00622 HTH_LUXR_1; PS50043 HTH_LUXR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLDLVHFPNYKKTFFGSSFQSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLT CCCEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHCCEEEEHHHCCCCCCCCCCCCCCEE VLMTLPATWVARYSSKNYFAIDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDA EEEECCHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH EKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGC HHCCCCEEEEEEECCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA CCHHHHHHHCCCCHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHH VATALSLGIIDMPEVQHLV HHHHHHHCCCCCCHHHHCC >Mature Secondary Structure SLDLVHFPNYKKTFFGSSFQSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLT CCEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHCCEEEEHHHCCCCCCCCCCCCCCEE VLMTLPATWVARYSSKNYFAIDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDA EEEECCHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH EKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGC HHCCCCEEEEEEECCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA CCHHHHHHHCCCCHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHH VATALSLGIIDMPEVQHLV HHHHHHHCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA