Definition | Brucella melitensis ATCC 23457 chromosome chromosome II, complete sequence. |
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Accession | NC_012442 |
Length | 1,185,518 |
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The map label for this gene is emrK [H]
Identifier: 225685979
GI number: 225685979
Start: 116000
End: 117241
Strand: Reverse
Name: emrK [H]
Synonym: BMEA_B0120
Alternate gene names: 225685979
Gene position: 117241-116000 (Counterclockwise)
Preceding gene: 225685982
Following gene: 225685978
Centisome position: 9.89
GC content: 59.34
Gene sequence:
>1242_bases ATGTGCTGTGCAGAAAGTTCACTCATGTCCGCCCCGAAATCCGTTGATAAAGCTGATATTCGTCCATTTCCGACCGCCAA AACCGTTGCGCCGCTCCATCAGCCTGCAACGAATGAAGCGCCTGCCAATGAAAGAACGCAGCCCCACGCCGTTCCGGACG AAGCCGTATCCGCCAAGGGCGGCGCGAAGAAAGGCTTCGGCAAGCGCGTCGACCTGCCCAGCCTTGTAGCCGTCGCTGCC ATAGGCGCGCTCTGGTATGGCTATAACTGGTGGACCGTCGGGCGCTTCATGGTTTCGACAGACGATGCCTATGTTCAGGG CGACATTGCCTCCATCGCACCCAAGGTCACCGGCTATATTGAAAACATCCCCGTAGCCGCAAACCAGCAGGTCAAGGCCG GCGATGTGATCTTCCAGCTCGATGCGGGCGACTATCAGATCGCGCTTGACGAAGCCAATGCCAAGCTGGCCACGCAAAAA GAAACGCTCATCCGCATCCAGGCCCAGACCGATGCCGCCAAGGCCGCGCTGTTGCAGGCAAATGCCGATCAGCAGGCGGC CAAGGCCGTGCTGCTCAACGCGCAGAGCACCATGGCTCGCGTGCAGAAGCTGCATGAAACCCGTTTCGTCGCGCAATCCG AACTCGACAATGCCCAGTCCGCCCTGGACCAGGCCCGCGCCAGGCTGGCCGGGGTAGATGCGCAAATTGCATCCGCCAAG GCCAATATTTCCGTTCTCGAAGCGCAATATAATGAAGCGGCAAGCTCTACTAAATCGCTGGAACTTGCCCGCGATAAGGC TGCACGCGATCTTTCGTTTACGAGCCTGCGCGCGCCTTTCGACGGTGTGATCGGCAATCTTTCCGGCAAGAAGGGCGACC TCGTTGCCCCCGGCCAGAAGATCGCGGCGCTCGTGCCGGTCGACCAGCTTTATATCGATGCGAATTTCAAGGAAACCCAA CTCGCCCACATCAAGGTTGGCGAGACGGCGCATATCTATGTCGATGCGATCGACGGCACGAAGTTTGACGGCAAGGTAGC CTCCATTGCTCCGGCTTCCGGTGCGGTGTTCTCGCTACTGCCGCCGGAAAACGCCACCGGGAATTTCACCAAGGTCGTGC AGCGCGTTCCGGTTCGCATCACCATTCCGAAAGAAGCATTTGAATCCGGCAAGATCCGTGCGGGCCTCAGCGTCATTGTT GACGTGGACACGCGCACCGCGCCGGACCAGACGGCAAACTGA
Upstream 100 bases:
>100_bases AAAGCAGGACTCTTAACTTTTTTCGAACCAAACGGTTCGATGCCTCTTGATATGAGCATCTCATTGATCTAAGTCAACAT CGAACCGAACGGTTCAATCC
Downstream 100 bases:
>100_bases CTGGAACAGCAAAACATTCAGAACCGAATGGCGAAGCCTGAAAGCCTGAACGGGCCGGGCATTGCCGTTTTCTCTTCCCG GAGCGCGTCAATATGGCCGC
Product: secretion protein HlyD family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 413; Mature: 413
Protein sequence:
>413_residues MCCAESSLMSAPKSVDKADIRPFPTAKTVAPLHQPATNEAPANERTQPHAVPDEAVSAKGGAKKGFGKRVDLPSLVAVAA IGALWYGYNWWTVGRFMVSTDDAYVQGDIASIAPKVTGYIENIPVAANQQVKAGDVIFQLDAGDYQIALDEANAKLATQK ETLIRIQAQTDAAKAALLQANADQQAAKAVLLNAQSTMARVQKLHETRFVAQSELDNAQSALDQARARLAGVDAQIASAK ANISVLEAQYNEAASSTKSLELARDKAARDLSFTSLRAPFDGVIGNLSGKKGDLVAPGQKIAALVPVDQLYIDANFKETQ LAHIKVGETAHIYVDAIDGTKFDGKVASIAPASGAVFSLLPPENATGNFTKVVQRVPVRITIPKEAFESGKIRAGLSVIV DVDTRTAPDQTAN
Sequences:
>Translated_413_residues MCCAESSLMSAPKSVDKADIRPFPTAKTVAPLHQPATNEAPANERTQPHAVPDEAVSAKGGAKKGFGKRVDLPSLVAVAA IGALWYGYNWWTVGRFMVSTDDAYVQGDIASIAPKVTGYIENIPVAANQQVKAGDVIFQLDAGDYQIALDEANAKLATQK ETLIRIQAQTDAAKAALLQANADQQAAKAVLLNAQSTMARVQKLHETRFVAQSELDNAQSALDQARARLAGVDAQIASAK ANISVLEAQYNEAASSTKSLELARDKAARDLSFTSLRAPFDGVIGNLSGKKGDLVAPGQKIAALVPVDQLYIDANFKETQ LAHIKVGETAHIYVDAIDGTKFDGKVASIAPASGAVFSLLPPENATGNFTKVVQRVPVRITIPKEAFESGKIRAGLSVIV DVDTRTAPDQTAN >Mature_413_residues MCCAESSLMSAPKSVDKADIRPFPTAKTVAPLHQPATNEAPANERTQPHAVPDEAVSAKGGAKKGFGKRVDLPSLVAVAA IGALWYGYNWWTVGRFMVSTDDAYVQGDIASIAPKVTGYIENIPVAANQQVKAGDVIFQLDAGDYQIALDEANAKLATQK ETLIRIQAQTDAAKAALLQANADQQAAKAVLLNAQSTMARVQKLHETRFVAQSELDNAQSALDQARARLAGVDAQIASAK ANISVLEAQYNEAASSTKSLELARDKAARDLSFTSLRAPFDGVIGNLSGKKGDLVAPGQKIAALVPVDQLYIDANFKETQ LAHIKVGETAHIYVDAIDGTKFDGKVASIAPASGAVFSLLPPENATGNFTKVVQRVPVRITIPKEAFESGKIRAGLSVIV DVDTRTAPDQTAN
Specific function: Unknown
COG id: COG1566
COG function: function code V; Multidrug resistance efflux pump
Gene ontology:
Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]
Homologues:
Organism=Escherichia coli, GI1788711, Length=355, Percent_Identity=32.6760563380282, Blast_Score=161, Evalue=8e-41, Organism=Escherichia coli, GI1789041, Length=371, Percent_Identity=33.4231805929919, Blast_Score=159, Evalue=4e-40, Organism=Escherichia coli, GI1790519, Length=300, Percent_Identity=32, Blast_Score=134, Evalue=1e-32, Organism=Escherichia coli, GI87081951, Length=315, Percent_Identity=27.3015873015873, Blast_Score=96, Evalue=5e-21, Organism=Escherichia coli, GI1789637, Length=328, Percent_Identity=26.8292682926829, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1790024, Length=246, Percent_Identity=28.4552845528455, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1790012, Length=259, Percent_Identity=27.7992277992278, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI87081796, Length=186, Percent_Identity=25.2688172043011, Blast_Score=63, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005694 - InterPro: IPR006143 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 43684; Mature: 43684
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCCAESSLMSAPKSVDKADIRPFPTAKTVAPLHQPATNEAPANERTQPHAVPDEAVSAKG CCCCCCHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC GAKKGFGKRVDLPSLVAVAAIGALWYGYNWWTVGRFMVSTDDAYVQGDIASIAPKVTGYI CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEECCHHHHCHHHHHHH ENIPVAANQQVKAGDVIFQLDAGDYQIALDEANAKLATQKETLIRIQAQTDAAKAALLQA HCCCCCCCCCEECCCEEEEECCCCEEEEEECCCCCEEECCEEEEEEEECCCHHHHHHHHC NADQQAAKAVLLNAQSTMARVQKLHETRFVAQSELDNAQSALDQARARLAGVDAQIASAK CCCHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC ANISVLEAQYNEAASSTKSLELARDKAARDLSFTSLRAPFDGVIGNLSGKKGDLVAPGQK CCEEEEEEHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCCHHHHHCCCCCCCCCEECCCCC IAALVPVDQLYIDANFKETQLAHIKVGETAHIYVDAIDGTKFDGKVASIAPASGAVFSLL EEEEECEEEEEEECCCCCCEEEEEEECCEEEEEEEECCCCCCCCEEEEECCCCCCEEEEE PPENATGNFTKVVQRVPVRITIPKEAFESGKIRAGLSVIVDVDTRTAPDQTAN CCCCCCCHHHHHHHHCCEEEEECHHHHHCCCEEECEEEEEEECCCCCCCCCCC >Mature Secondary Structure MCCAESSLMSAPKSVDKADIRPFPTAKTVAPLHQPATNEAPANERTQPHAVPDEAVSAKG CCCCCCHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC GAKKGFGKRVDLPSLVAVAAIGALWYGYNWWTVGRFMVSTDDAYVQGDIASIAPKVTGYI CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEECCHHHHCHHHHHHH ENIPVAANQQVKAGDVIFQLDAGDYQIALDEANAKLATQKETLIRIQAQTDAAKAALLQA HCCCCCCCCCEECCCEEEEECCCCEEEEEECCCCCEEECCEEEEEEEECCCHHHHHHHHC NADQQAAKAVLLNAQSTMARVQKLHETRFVAQSELDNAQSALDQARARLAGVDAQIASAK CCCHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC ANISVLEAQYNEAASSTKSLELARDKAARDLSFTSLRAPFDGVIGNLSGKKGDLVAPGQK CCEEEEEEHHHHHHCCHHHHHHHHHHHHCCCCHHHHCCCHHHHHCCCCCCCCCEECCCCC IAALVPVDQLYIDANFKETQLAHIKVGETAHIYVDAIDGTKFDGKVASIAPASGAVFSLL EEEEECEEEEEEECCCCCCEEEEEEECCEEEEEEEECCCCCCCCEEEEECCCCCCEEEEE PPENATGNFTKVVQRVPVRITIPKEAFESGKIRAGLSVIVDVDTRTAPDQTAN CCCCCCCHHHHHHHHCCEEEEECHHHHHCCCEEECEEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]