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The map label for this gene is yeaT [C]

Identifier: 225685962

GI number: 225685962

Start: 94842

End: 95735

Strand: Reverse

Name: yeaT [C]

Synonym: BMEA_B0100

Alternate gene names: 225685962

Gene position: 95735-94842 (Counterclockwise)

Preceding gene: 225685963

Following gene: 225685961

Centisome position: 8.08

GC content: 59.73

Gene sequence:

>894_bases
ATGGACACGCTGACACGCATGCGCGCCTTCATCGACGTGGTCGAGGCGGAAGGCTTTTCCGCCGCAGCGCGCAAGATCGG
GCGGTCCAAGGCACTTCTTTCCAAATATGTGCGCGAGCTGGAAGACGAACTCGGTGCCCGGCTTCTCAACCGCACCACGC
GGCAATTCTCGCTTACTGAGGCCGGACATACCTATTATCACCGCGCGCTCGAAATCATCCGCGAGATCGATGCGCTTCAA
GATGCCGTCAGCGAAACCAGTTCGGATGCACGCGGCCGCATCAAGCTTTCCGCCCCGCGTACATTCGCCGATGCCGTGAT
CGGTCAGTCACTCATCGATTTCTGCCTTGCACACCCGGAAATCGTGCTCGACGTGCGGCTGGACGACCGTTTTGTCGATC
TGGTGGAAGAAGGCTTCGACCTTGCCATCCGCATCACACGCTTGCAGGACTCCTCCCTCATTGCAAAGCGGCTGTCACCA
TTCCATTCCGTCTTGTGCGGCGCGCCGGAACTGATCGCCCGCGTGGGCAAGCCACAACGGCCGGAGGATCTGACCGACCG
CCCCTGTATCGTCGACACCAATGCGCGCGCGCGCAATAATTGGCACTTCCGCAATATGGACGGCTCAATGATGACCGTGC
CGGTCAGCGGCCCGATCGAGATAAACAGCCCCGTCGCCACCAAGAATGCGGCGCTTGCGGGCCTCGGCTTCTGCATGTTG
CCTGCTTTCATCGCCGAAGATGAGATCGAGCAAGGCAAGCTGATCACCTGCCTGGACGAATTCATCGTCCGGGATGGCGG
CATCTATGCGGTCTATCCCCATCGGCGCTATCTGCCCGCGAAAATCCGCGCACTCGTGGATTTTATGACCCAATGGTTCA
AGGAGCGGGAATAG

Upstream 100 bases:

>100_bases
GTATGACGCACCCTTTGGCATTTCCTTCATCGGACCACGCGGCAGCGACCGGACGCTGATCGCGCTGGCTCAAACCATCA
TCAGCGAGCGGAGTTAGACC

Downstream 100 bases:

>100_bases
TGTCTCACTTTTGCCGCCTTCAGGCATAAGCGTAATCCAATGAAATTTTCTATGCTGGTTTCGCTCTGGCCCAGGCGCAG
CTTCGTCCGGTCTGCCGCAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTYYHRALEIIREIDALQ
DAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDVRLDDRFVDLVEEGFDLAIRITRLQDSSLIAKRLSP
FHSVLCGAPELIARVGKPQRPEDLTDRPCIVDTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCML
PAFIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFMTQWFKERE

Sequences:

>Translated_297_residues
MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTYYHRALEIIREIDALQ
DAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDVRLDDRFVDLVEEGFDLAIRITRLQDSSLIAKRLSP
FHSVLCGAPELIARVGKPQRPEDLTDRPCIVDTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCML
PAFIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFMTQWFKERE
>Mature_297_residues
MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTYYHRALEIIREIDALQ
DAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDVRLDDRFVDLVEEGFDLAIRITRLQDSSLIAKRLSP
FHSVLCGAPELIARVGKPQRPEDLTDRPCIVDTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCML
PAFIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFMTQWFKERE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=32.3232323232323, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=32.1678321678322, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=30.6397306397306, Blast_Score=150, Evalue=6e-38,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=29.1525423728814, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=30.8219178082192, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=29.0657439446367, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=29.4736842105263, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1789173, Length=270, Percent_Identity=26.2962962962963, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786448, Length=297, Percent_Identity=25.5892255892256, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790011, Length=287, Percent_Identity=23.3449477351916, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=134, Percent_Identity=25.3731343283582, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI157672245, Length=117, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788748, Length=146, Percent_Identity=28.7671232876712, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33395; Mature: 33395

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTE
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH
AGHTYYHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCC
IVLDVRLDDRFVDLVEEGFDLAIRITRLQDSSLIAKRLSPFHSVLCGAPELIARVGKPQR
EEEEEEECHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
PEDLTDRPCIVDTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCML
CCCCCCCCEEEECCCCCCCCCEEECCCCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHH
PAFIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFMTQWFKERE
HHHHHHCHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTE
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH
AGHTYYHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCC
IVLDVRLDDRFVDLVEEGFDLAIRITRLQDSSLIAKRLSPFHSVLCGAPELIARVGKPQR
EEEEEEECHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
PEDLTDRPCIVDTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCML
CCCCCCCCEEEECCCCCCCCCEEECCCCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHH
PAFIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFMTQWFKERE
HHHHHHCHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]